RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PSPHP78330 225 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 SPIBQ01892 262 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 DAG1Q14118 895 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 PCOLCEQ15113 449 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 NPTX1Q15818 432 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 CMPK2Q5EBM0 449 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 DEF8Q6ZN54 512 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 CYP4Z1Q86W10 505 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 OR4C15Q8NGM1 316 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 OR8K3Q8NH51 312 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 TP53INP1Q96A56 240 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 HSPBAP1Q96EW2 488 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 NRSN2Q9GZP1 204 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 ZNF700Q9H0M5 742 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 GABARAPL1Q9H0R8 117 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 ACER3Q9NUN7 267 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 RLIMQ9NVW2 624 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 MRTO4Q9UKD2 239 aaKnown RBP17.01■□□□□ 0.31
CLN3-254ENST00000637050 HS3ST3B1Q9Y662 390 aa17.01■□□□□ 0.31
CLN3-254ENST00000637050 IGHV1-45A0A0A0MS14 117 aa17■□□□□ 0.31
CLN3-254ENST00000637050 A0A1W2PQ72 361 aa17■□□□□ 0.31
CLN3-254ENST00000637050 CDHR4A6H8M9 788 aa17■□□□□ 0.31
CLN3-254ENST00000637050 TNFRSF11BO00300 401 aa17■□□□□ 0.31
CLN3-254ENST00000637050 DLGAP1O14490 977 aa17■□□□□ 0.31
CLN3-254ENST00000637050 ALPLP05186 524 aa17■□□□□ 0.31
CLN3-254ENST00000637050 ACADSP16219 412 aa17■□□□□ 0.31
CLN3-254ENST00000637050 MMP11P24347 488 aa17■□□□□ 0.31
CLN3-254ENST00000637050 LIMS1P48059 325 aa17■□□□□ 0.31
CLN3-254ENST00000637050 ALDH3A2P51648 485 aa17■□□□□ 0.31
CLN3-254ENST00000637050 NR0B1P51843 470 aaKnown RBP17■□□□□ 0.31
CLN3-254ENST00000637050 ATP12AP54707 1039 aa17■□□□□ 0.31
CLN3-254ENST00000637050 PPP2R2BQ00005 443 aa17■□□□□ 0.31
CLN3-254ENST00000637050 NHLH1Q02575 133 aa17■□□□□ 0.31
CLN3-254ENST00000637050 GK3PQ14409 553 aa17■□□□□ 0.31
CLN3-254ENST00000637050 PDZK1Q5T2W1 519 aa17■□□□□ 0.31
CLN3-254ENST00000637050 MRPL2Q5T653 305 aaKnown RBP17■□□□□ 0.31
CLN3-254ENST00000637050 WLSQ5T9L3 541 aa17■□□□□ 0.31
CLN3-254ENST00000637050 NUBPLQ8TB37 319 aa17■□□□□ 0.31
CLN3-254ENST00000637050 MAGEE2Q8TD90 523 aaPredicted RBP17■□□□□ 0.31
CLN3-254ENST00000637050 PHF10Q8WUB8 498 aaKnown RBP17■□□□□ 0.31
CLN3-254ENST00000637050 OIT3Q8WWZ8 545 aa17■□□□□ 0.31
CLN3-254ENST00000637050 DHRS1Q96LJ7 313 aa17■□□□□ 0.31
CLN3-254ENST00000637050 BARD1Q99728 777 aaKnown RBP17■□□□□ 0.31
CLN3-254ENST00000637050 OSBPL10Q9BXB5 764 aa17■□□□□ 0.31
CLN3-254ENST00000637050 USE1Q9NZ43 259 aa17■□□□□ 0.31
CLN3-254ENST00000637050 TCFL5Q9UL49 500 aa17■□□□□ 0.31
CLN3-254ENST00000637050 A4GNTQ9UNA3 340 aa17■□□□□ 0.31
CLN3-254ENST00000637050 HPRP00739 348 aa16.99■□□□□ 0.31
CLN3-254ENST00000637050 PRKACGP22612 351 aa16.99■□□□□ 0.31
CLN3-254ENST00000637050 LCN1P31025 176 aa16.99■□□□□ 0.31
CLN3-254ENST00000637050 NOVA1P51513 510 aaKnown RBP16.99■□□□□ 0.31
CLN3-254ENST00000637050 CDH12P55289 794 aa16.99■□□□□ 0.31
CLN3-254ENST00000637050 GANABQ14697 944 aaKnown RBP16.99■□□□□ 0.31
CLN3-254ENST00000637050 SWT1Q5T5J6 900 aaKnown RBP16.99■□□□□ 0.31
CLN3-254ENST00000637050 NLGN4XQ8N0W4 816 aa16.99■□□□□ 0.31
CLN3-254ENST00000637050 NLGN4YQ8NFZ3 816 aaPredicted RBP16.99■□□□□ 0.31
CLN3-254ENST00000637050 OR4C3Q8NH37 302 aa16.99■□□□□ 0.31
CLN3-254ENST00000637050 DIO2Q92813 273 aa16.99■□□□□ 0.31
CLN3-254ENST00000637050 EFHD2Q96C19 240 aaPredicted RBP16.99■□□□□ 0.31
CLN3-254ENST00000637050 RBM4BQ9BQ04 359 aaKnown RBP16.99■□□□□ 0.31
CLN3-254ENST00000637050 RBM4Q9BWF3 364 aaKnown RBP16.99■□□□□ 0.31
CLN3-254ENST00000637050 ARMC7Q9H6L4 198 aa16.99■□□□□ 0.31
CLN3-254ENST00000637050 POLR1BQ9H9Y6 1135 aa16.99■□□□□ 0.31
CLN3-254ENST00000637050 NMNAT1Q9HAN9 279 aaPredicted RBP16.99■□□□□ 0.31
CLN3-254ENST00000637050 FARSAQ9Y285 508 aaKnown RBP16.99■□□□□ 0.31
CLN3-254ENST00000637050 SDK2Q58EX2 2172 aa16.99■□□□□ 0.31
CLN3-254ENST00000637050 CDC14CA4D256 554 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 FRS3O43559 492 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 TPST2O60704 377 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 GADD45GO95257 159 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 COX6A1P12074 109 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 UQCRBP14927 111 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 FUT4P22083 530 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 STAT5AP42229 794 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 RGS8P57771 180 aaPredicted RBP16.98■□□□□ 0.31
CLN3-254ENST00000637050 PLAURQ03405 335 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 FGFBP1Q14512 234 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 COLEC12Q5KU26 742 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 KIRREL2Q6UWL6 708 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 MARCH9Q86YJ5 346 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 SLC34A3Q8N130 599 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 ADAMTS14Q8WXS8 1223 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 IMMP1LQ96LU5 166 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 PRRC1Q96M27 445 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 FAM117AQ9C073 453 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 HOXD1Q9GZZ0 328 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 EVA1AQ9H8M9 152 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 SMURF2Q9HAU4 748 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.98■□□□□ 0.31
CLN3-254ENST00000637050 PDP1Q9P0J1 537 aaPredicted RBP16.98■□□□□ 0.31
CLN3-254ENST00000637050 RHCGQ9UBD6 479 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 RAB26Q9ULW5 256 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 CUL9Q8IWT3 2517 aa16.98■□□□□ 0.31
CLN3-254ENST00000637050 TRBV11-1A0A0K0K1C0 115 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 SOCS6O14544 535 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 TERTO14746 1132 aaKnown RBP16.97■□□□□ 0.31
CLN3-254ENST00000637050 SLC30A4O14863 429 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 TSPAN2O60636 221 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 ZNF136P52737 540 aa16.97■□□□□ 0.31
CLN3-254ENST00000637050 PIN1Q13526 163 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms