RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 KIRREL2Q6UWL6 708 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 SLC29A4Q7RTT9 530 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 ZNF441Q8N8Z8 693 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 C7orf57Q8NEG2 295 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 ZNF597Q96LX8 424 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 ZNF570Q96NI8 536 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 ADOQ96SZ5 270 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 PDP1Q9P0J1 537 aaPredicted RBP18.55■□□□□ 0.56
CLN3-250ENST00000636839 A4GNTQ9UNA3 340 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 ZNF232Q9UNY5 417 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 IFT52Q9Y366 437 aa18.55■□□□□ 0.56
CLN3-250ENST00000636839 TMEM200CA6NKL6 621 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 NPIPB9F8W1W9 429 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 TNFRSF11BO00300 401 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 DBIP07108 87 aaKnown RBP18.54■□□□□ 0.56
CLN3-250ENST00000636839 CDK4P11802 303 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 NID1P14543 1247 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 ITGA2P17301 1181 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 DNAJA1P31689 397 aaKnown RBP18.54■□□□□ 0.56
CLN3-250ENST00000636839 LARS2Q15031 903 aaKnown RBP18.54■□□□□ 0.56
CLN3-250ENST00000636839 EXOC3L2Q2M3D2 409 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 HLA-DQA1Q5Y7H0 255 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 AP1ARQ63HQ0 302 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 HSDL2Q6YN16 418 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 ZNF347Q96SE7 839 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 NMNAT1Q9HAN9 279 aaPredicted RBP18.54■□□□□ 0.56
CLN3-250ENST00000636839 TCFL5Q9UL49 500 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 PPIEQ9UNP9 301 aaKnown RBP18.54■□□□□ 0.56
CLN3-250ENST00000636839 CFL2Q9Y281 166 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 SLC9A8Q9Y2E8 581 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 TRBV11-1A0A0K0K1C0 115 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 SNAP29O95721 258 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 FOLR3P41439 243 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 NDUFAF6Q330K2 333 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 ZIK1Q3SY52 487 aaPredicted RBP18.54■□□□□ 0.56
CLN3-250ENST00000636839 OR4C15Q8NGM1 316 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 CNOT9Q92600 299 aaKnown RBP18.54■□□□□ 0.56
CLN3-250ENST00000636839 POLE3Q9NRF9 147 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 SLC13A4Q9UKG4 626 aa18.54■□□□□ 0.56
CLN3-250ENST00000636839 LOC102723996A0A087X1L8 192 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 CDHR4A6H8M9 788 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 SYT5O00445 386 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 MITFO75030 526 aaPredicted RBP18.53■□□□□ 0.56
CLN3-250ENST00000636839 ADAM11O75078 769 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 SOX30O94993 753 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 ALPLP05186 524 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 THBS1P07996 1170 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 GABREP78334 506 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 PPP2R2BQ00005 443 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 DAG1Q14118 895 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 GK3PQ14409 553 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 DECR1Q16698 335 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 APOOLQ6UXV4 268 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 G6PC3Q9BUM1 346 aa18.53■□□□□ 0.56
CLN3-250ENST00000636839 C19orf25Q9UFG5 118 aaPredicted RBP18.53■□□□□ 0.56
CLN3-250ENST00000636839 IGHV1-45A0A0A0MS14 117 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 TRBV4-1A0A0J9YWV2 114 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 WWP2O00308 870 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 REM1O75628 298 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 COX6A1P12074 109 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 CEACAM1P13688 526 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 FPR1P21462 350 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 ZNF136P52737 540 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 LSM11P83369 360 aaKnown RBP eCLIP18.52■□□□□ 0.56
CLN3-250ENST00000636839 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.52■□□□□ 0.56
CLN3-250ENST00000636839 LIN52Q52LA3 116 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 NHSL2Q5HYW2 709 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 CYP4Z1Q86W10 505 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 SVOPLQ8N434 492 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 GATSQ8NAP1 163 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 PHF10Q8WUB8 498 aaKnown RBP18.52■□□□□ 0.56
CLN3-250ENST00000636839 EPYCQ99645 322 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 OSBPL10Q9BXB5 764 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 VCXQ9H320 206 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 KCND3Q9UK17 655 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 FARSAQ9Y285 508 aaKnown RBP18.52■□□□□ 0.56
CLN3-250ENST00000636839 PCDHGB5Q9Y5G0 923 aa18.52■□□□□ 0.56
CLN3-250ENST00000636839 MRPS18BQ9Y676 258 aaKnown RBP18.52■□□□□ 0.56
CLN3-250ENST00000636839 TTC36A6NLP5 189 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 OR6C76A6NM76 312 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 CPSF4LA6NMK7 179 aaKnown RBP18.52■□□□□ 0.55
CLN3-250ENST00000636839 C17orf51A8MQB3 221 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 SOCS6O14544 535 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 ADAMDEC1O15204 470 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 DPM1O60762 260 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 ABCB7O75027 752 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 IL33O95760 270 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 ABCD3P28288 659 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 OTX2P32243 289 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 DAPP51397 102 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 ALDH3A2P51648 485 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 ATP12AP54707 1039 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 RGS8P57771 180 aaPredicted RBP18.52■□□□□ 0.55
CLN3-250ENST00000636839 SEC23BQ15437 767 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 TMPRSS12Q86WS5 348 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 OR11G2Q8NGC1 345 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 VMP1Q96GC9 406 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 RTN4RQ9BZR6 473 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 DLL3Q9NYJ7 618 aa18.52■□□□□ 0.55
CLN3-250ENST00000636839 HS6ST1O60243 411 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms