RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 RINLQ6ZS11 566 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 MARCH3Q86UD3 253 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 GTF2IRD2Q86UP8 949 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 WDR75Q8IWA0 830 aaKnown RBP12.83□□□□□ -0.36
CLN3-249ENST00000636685 SLC44A2Q8IWA5 706 aaPredicted RBP12.83□□□□□ -0.36
CLN3-249ENST00000636685 CTAGE4Q8IX94 777 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 PLD6Q8N2A8 252 aaKnown RBP12.83□□□□□ -0.36
CLN3-249ENST00000636685 TEX9Q8N6V9 391 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 MAGOHBQ96A72 148 aaKnown RBP12.83□□□□□ -0.36
CLN3-249ENST00000636685 KLHL29Q96CT2 875 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 MUCL1Q96DR8 90 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 VSTM2LQ96N03 204 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 TMEM185BQ9H7F4 350 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 METTL17Q9H7H0 456 aaPredicted RBP12.83□□□□□ -0.36
CLN3-249ENST00000636685 STOML1Q9UBI4 398 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 CHMP2BQ9UQN3 213 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 ZNF281Q9Y2X9 895 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 NBEAL2Q6ZNJ1 2754 aa12.83□□□□□ -0.36
CLN3-249ENST00000636685 H0YIV9 168 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 PHGDHO43175 533 aaKnown RBP12.82□□□□□ -0.36
CLN3-249ENST00000636685 CXCR5P32302 372 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 ELK3P41970 407 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 PIK3CGP48736 1102 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 SLC12A2P55011 1212 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 MRPS22P82650 360 aaKnown RBP12.82□□□□□ -0.36
CLN3-249ENST00000636685 HBMQ6B0K9 141 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 FAM216AQ8WUB2 273 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 KCTD4Q8WVF5 259 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 OSTF1Q92882 214 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 CNRIP1Q96F85 164 aaPredicted RBP12.82□□□□□ -0.36
CLN3-249ENST00000636685 KLHL13Q9P2N7 655 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 OR10H1Q9Y4A9 318 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLN3-249ENST00000636685 PMF1-BGLAPU3KQ54 211 aa12.82□□□□□ -0.36
CLN3-249ENST00000636685 C1orf226A1L170 272 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 DHRS4L1P0CG22 281 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 IL2RGP31785 369 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 ZNF83P51522 516 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 ATP6V0D1P61421 351 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 LGALS3BPQ08380 585 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 AWAT1Q58HT5 328 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 ZNF628Q5EBL2 1059 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 CCNYL2Q5T2Q4 361 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 LIPJQ5W064 366 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 STEAP4Q687X5 459 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 ZNF544Q6NX49 715 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 TDRPQ86YL5 185 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 TMEM139Q8IV31 216 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 WDR20Q8TBZ3 569 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 RNF128Q8TEB7 428 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 UBTD2Q8WUN7 234 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 ZNF681Q96N22 645 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 BAG1Q99933 345 aaPredicted RBP12.81□□□□□ -0.36
CLN3-249ENST00000636685 BPESC1Q9GZL8 116 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 RRAGDQ9NQL2 400 aaPredicted RBP12.81□□□□□ -0.36
CLN3-249ENST00000636685 NUDT4Q9NZJ9 180 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 PRSS50Q9UI38 385 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 ABCG2Q9UNQ0 655 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 MGAT4BQ9UQ53 548 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 MTO1Q9Y2Z2 717 aaKnown RBP12.81□□□□□ -0.36
CLN3-249ENST00000636685 PCDHGB1Q9Y5G3 927 aa12.81□□□□□ -0.36
CLN3-249ENST00000636685 SUPT3HB4E1H0 165 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 UBXN8O00124 270 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 FOXE1O00358 373 aaPredicted RBP12.8□□□□□ -0.36
CLN3-249ENST00000636685 NDUFB5O43674 189 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 SUPT3HO75486 399 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 BCAS2O75934 225 aaPredicted RBP12.8□□□□□ -0.36
CLN3-249ENST00000636685 SEMA3DO95025 777 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 BMP4P12644 408 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 ZNF17P17021 662 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 MAPK12P53778 367 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 CHRNB3Q05901 458 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 MGAT5Q09328 741 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 ACAP2Q15057 778 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 ZNF239Q16600 458 aaKnown RBP12.8□□□□□ -0.36
CLN3-249ENST00000636685 SH2D4BQ5SQS7 431 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 TIMM23BQ5SRD1 257 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 CCDC137Q6PK04 289 aaKnown RBP12.8□□□□□ -0.36
CLN3-249ENST00000636685 TMEM108Q6UXF1 575 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 Q6ZT83 130 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 ESPNLQ6ZVH7 1005 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 PEG10Q86TG7 708 aaKnown RBP12.8□□□□□ -0.36
CLN3-249ENST00000636685 SORCS2Q96PQ0 1159 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 SERPINI1Q99574 410 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 MCMBPQ9BTE3 642 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 MRPL1Q9BYD6 325 aaKnown RBP12.8□□□□□ -0.36
CLN3-249ENST00000636685 RHOJQ9H4E5 214 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 ALG9Q9H6U8 611 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 RNF11Q9Y3C5 154 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 ANGPTL3Q9Y5C1 460 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 FKBP7Q9Y680 259 aa12.8□□□□□ -0.36
CLN3-249ENST00000636685 KMT2CQ8NEZ4 4911 aaKnown RBP12.79□□□□□ -0.36
CLN3-249ENST00000636685 LOC390937A0A1W2PQ73 354 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 PIAS1O75925 651 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 PABPC4LP0CB38 370 aaKnown RBP12.79□□□□□ -0.36
CLN3-249ENST00000636685 EDNRAP25101 427 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 CD40P25942 277 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 SHC1P29353 583 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 CARD18P57730 90 aa12.79□□□□□ -0.36
CLN3-249ENST00000636685 RAC1P63000 192 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms