RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TTTY12Q9BZ98 90 aa16.28■□□□□ 0.2
CLN3-247ENST00000636351 OR51I1Q9H343 314 aa16.28■□□□□ 0.2
CLN3-247ENST00000636351 PIGUQ9H490 435 aa16.28■□□□□ 0.2
CLN3-247ENST00000636351 ZNF385DQ9H6B1 395 aa16.28■□□□□ 0.2
CLN3-247ENST00000636351 GALNT9Q9HCQ5 603 aa16.28■□□□□ 0.2
CLN3-247ENST00000636351 SERHLQ9NQF3 203 aa16.28■□□□□ 0.2
CLN3-247ENST00000636351 TMEM45AQ9NWC5 275 aa16.28■□□□□ 0.2
CLN3-247ENST00000636351 PCDHGB3Q9Y5G1 929 aa16.28■□□□□ 0.2
CLN3-247ENST00000636351 CCDC168Q8NDH2 2452 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 NCOA6Q14686 2063 aaPredicted RBP16.27■□□□□ 0.2
CLN3-247ENST00000636351 ANKRD33BA6NCL7 494 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 SCO2O43819 266 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 CDC40O60508 579 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLN3-247ENST00000636351 KCNK2O95069 426 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 SNX4O95219 450 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 UTS2O95399 124 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 IGKV1D-16P01601 117 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 CAPN3P20807 821 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 ATP6V1C1P21283 382 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 EVI2BP34910 448 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 RNFT1Q5M7Z0 435 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 DCST2Q5T1A1 773 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 C16orf62Q7Z3J2 963 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 CPLX4Q7Z7G2 160 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 RNF130Q86XS8 419 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 DOLPP1Q86YN1 238 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 CHERPQ8IWX8 916 aaKnown RBP16.27■□□□□ 0.2
CLN3-247ENST00000636351 PNPT1Q8TCS8 783 aaKnown RBP16.27■□□□□ 0.2
CLN3-247ENST00000636351 ELAC2Q9BQ52 826 aaKnown RBP16.27■□□□□ 0.2
CLN3-247ENST00000636351 G6PC3Q9BUM1 346 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 ANGPTL4Q9BY76 406 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 SERHL2Q9H4I8 314 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 IL1RL2Q9HB29 575 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 ZFP64Q9NPA5 681 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 MRGBPQ9NV56 204 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 B4GALT7Q9UBV7 327 aa16.27■□□□□ 0.2
CLN3-247ENST00000636351 CELSR1Q9NYQ6 3014 aa16.27■□□□□ 0.19
CLN3-247ENST00000636351 NINQ8N4C6 2090 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 GMNCA6NCL1 334 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 DUXAA6NLW8 204 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 GNB5O14775 395 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 SOX30O94993 753 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 KRT75O95678 551 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 TRPC1P48995 793 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 MAN2A2P49641 1150 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 CLK3P49761 638 aaKnown RBP16.26■□□□□ 0.19
CLN3-247ENST00000636351 ANXA11P50995 505 aaKnown RBP16.26■□□□□ 0.19
CLN3-247ENST00000636351 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.26■□□□□ 0.19
CLN3-247ENST00000636351 GTDC1Q4AE62 458 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 EXOSC6Q5RKV6 272 aaKnown RBP16.26■□□□□ 0.19
CLN3-247ENST00000636351 ATAD3BQ5T9A4 648 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 SLC30A6Q6NXT4 461 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 PHF10Q8WUB8 498 aaKnown RBP16.26■□□□□ 0.19
CLN3-247ENST00000636351 GTF2H4Q92759 462 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 TBL1XR1Q9BZK7 514 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 PROK2Q9HC23 129 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 EXD2Q9NVH0 621 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 GIN1Q9NXP7 522 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 FLRT3Q9NZU0 649 aa16.26■□□□□ 0.19
CLN3-247ENST00000636351 C2orf72A6NCS6 295 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 LRRC3CA6NJW4 275 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 E9PLN8 166 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 PRRG2O14669 202 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 ADAM10O14672 748 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 ANGPT2O15123 496 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 AGR2O95994 175 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 OR12D1P0DN82 309 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 HPGDP15428 266 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 DRD4P21917 467 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 MAGEA5P43359 124 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 HPCAP84074 193 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 FOXO1Q12778 655 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 STX5Q13190 355 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 SNTA1Q13424 505 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 GRAMD1BQ3KR37 738 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 FGD2Q7Z6J4 655 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 FAM109AQ8N4B1 249 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 TMEM251Q8N6I4 163 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 MIPOL1Q8TD10 442 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 XAGE5Q8WWM1 108 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 SDCCAG3Q96C92 435 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 C14orf79Q96F83 325 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 AURKBQ96GD4 344 aaPredicted RBP16.25■□□□□ 0.19
CLN3-247ENST00000636351 TMEM41AQ96HV5 264 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 DMRTA2Q96SC8 542 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 SPOCK3Q9BQ16 436 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 VKORC1Q9BQB6 163 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 SLC6A13Q9NSD5 602 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 LEF1Q9UJU2 399 aaPredicted RBP16.25■□□□□ 0.19
CLN3-247ENST00000636351 ABCG2Q9UNQ0 655 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 WIF1Q9Y5W5 379 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 KCNE3Q9Y6H6 103 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 PCNX1Q96RV3 2341 aa16.25■□□□□ 0.19
CLN3-247ENST00000636351 C2CD3Q4AC94 2353 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 HIVEP1P15822 2718 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 A0A096LPI6 279 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 A0A1W2PP18 115 aa16.24■□□□□ 0.19
CLN3-247ENST00000636351 TRIM3O75382 744 aaPredicted RBP16.24■□□□□ 0.19
CLN3-247ENST00000636351 GLSO94925 669 aaPredicted RBP16.24■□□□□ 0.19
CLN3-247ENST00000636351 AK1P00568 194 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 169.1 ms