RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 RPH3AQ9Y2J0 694 aaPredicted RBP17.18■□□□□ 0.34
CDX1-202ENST00000616154 MRPS18CQ9Y3D5 142 aaKnown RBP17.18■□□□□ 0.34
CDX1-202ENST00000616154 TMEM233B4DJY2 109 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 TSPAN2O60636 221 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 COQ9O75208 318 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 HRGP04196 525 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 CHMP24386 653 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 FRKP42685 505 aaPredicted RBP17.17■□□□□ 0.34
CDX1-202ENST00000616154 LHX2P50458 406 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 EEF1A1P68104 462 aaKnown RBP17.17■□□□□ 0.34
CDX1-202ENST00000616154 EFR3AQ14156 821 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 EEF1A1P5Q5VTE0 462 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 AAGABQ6PD74 315 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 NPSR1Q6W5P4 371 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 INTS12Q96CB8 462 aaKnown RBP17.17■□□□□ 0.34
CDX1-202ENST00000616154 ADOQ96SZ5 270 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 PIGMQ9H3S5 423 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 FOLH1BQ9HBA9 442 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 TAS2R9Q9NYW1 312 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 FBXL2Q9UKC9 423 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 RAP2CQ9Y3L5 183 aa17.17■□□□□ 0.34
CDX1-202ENST00000616154 PIP5K1BO14986 540 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 LYPLA1O75608 230 aaPredicted RBP17.16■□□□□ 0.34
CDX1-202ENST00000616154 LINC00032P0C843 101 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 ZNF708P17019 499 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 NTSP30990 170 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 CPA2P48052 419 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 STARP49675 285 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 NCBP2P52298 156 aaKnown RBP eCLIP17.16■□□□□ 0.34
CDX1-202ENST00000616154 CLDN18P56856 261 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 CORO7P57737 925 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 PSG6Q00889 435 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 GAB1Q13480 694 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 LUZP2Q86TE4 346 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 HOXB13Q92826 284 aaPredicted RBP17.16■□□□□ 0.34
CDX1-202ENST00000616154 SFXN2Q96NB2 322 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 SLCO1B3Q9NPD5 702 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 ADAM21Q9UKJ8 722 aa17.16■□□□□ 0.34
CDX1-202ENST00000616154 SH3D21A4FU49 640 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 UPK1AO00322 258 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 HCRTR2O43614 444 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 EDF1O60869 148 aaKnown RBP17.15■□□□□ 0.34
CDX1-202ENST00000616154 SHOX2O60902 331 aaPredicted RBP17.15■□□□□ 0.34
CDX1-202ENST00000616154 JUNP05412 331 aaKnown RBP17.15■□□□□ 0.34
CDX1-202ENST00000616154 LSP1P33241 339 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 KRT20P35900 424 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 MC3RP41968 323 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 RPL38P63173 70 aaKnown RBP17.15■□□□□ 0.34
CDX1-202ENST00000616154 SH2D4BQ5SQS7 431 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 PLXDC2Q6UX71 529 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 LARP4Q71RC2 724 aaKnown RBP eCLIP17.15■□□□□ 0.34
CDX1-202ENST00000616154 KIRREL3Q8IZU9 778 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 GCNT2Q8N0V5 402 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 CDC26Q8NHZ8 85 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 SMPDL3BQ92485 455 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 MTERF3Q96E29 417 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 ELP4Q96EB1 424 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 GSX1Q9H4S2 264 aaPredicted RBP17.15■□□□□ 0.34
CDX1-202ENST00000616154 REEP4Q9H6H4 257 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 NTMQ9P121 344 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 DKKL1Q9UK85 242 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 PACSIN3Q9UKS6 424 aa17.15■□□□□ 0.34
CDX1-202ENST00000616154 A8MXE2 369 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 NME6O75414 186 aaPredicted RBP17.14■□□□□ 0.33
CDX1-202ENST00000616154 HSPA4LO95757 839 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 IL12BP29460 328 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 ASMTP46597 345 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 PNLIPRP2P54317 469 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 GAS1P54826 345 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 DIO3P55073 304 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 POU4F3Q15319 338 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 GRAMD2AQ8IUY3 354 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 WFDC11Q8NEX6 87 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 PPP3R2Q96LZ3 170 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 ACSS1Q9NUB1 689 aaPredicted RBP17.14■□□□□ 0.33
CDX1-202ENST00000616154 ZDHHC2Q9UIJ5 367 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 FIS1Q9Y3D6 152 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 ABCA2Q9BZC7 2435 aa17.14■□□□□ 0.33
CDX1-202ENST00000616154 NSD1Q96L73 2696 aaPredicted RBP17.14■□□□□ 0.33
CDX1-202ENST00000616154 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 A0A1W2PNV4 684 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 A0A1W2PPR1 153 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 TTC36A6NLP5 189 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 B4DXG7 233 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 PDPK1O15530 556 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 ZIC3O60481 467 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 TNFSF13O75888 250 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 TGM6O95932 706 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 BCKDHAP12694 445 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 DPP4P27487 766 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 MAP3K8P41279 467 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 MRPS22P82650 360 aaKnown RBP17.13■□□□□ 0.33
CDX1-202ENST00000616154 BCL2A1Q16548 175 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 CYP27C1Q4G0S4 372 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 ZNF385BQ569K4 471 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 OR5M10Q6IEU7 315 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 TMEM107Q6UX40 140 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 DDIASQ8IXT1 998 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 ZNF781Q8N8C0 355 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 TSSK3Q96PN8 268 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms