RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 SLC25A21Q9BQT8 299 aaPredicted RBP4.7□□□□□ -1.66
VPS13D-213ENST00000613099 TEX101Q9BY14 249 aa4.7□□□□□ -1.66
VPS13D-213ENST00000613099 OR2S2Q9NQN1 319 aa4.7□□□□□ -1.66
VPS13D-213ENST00000613099 H7C4K7 107 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 FGBP02675 491 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ACPPP15309 386 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 PRSS3P35030 304 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 SCARF1Q14162 830 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ECM1Q16610 540 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 B3GLCTQ6Y288 498 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 C16orf59Q7L2K0 433 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 LAX1Q8IWV1 398 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ZC3H3Q8IXZ2 948 aaKnown RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 GABRG1Q8N1C3 465 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 OR4L1Q8NH43 312 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 TSEN15Q8WW01 171 aaKnown RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 OTUB2Q96DC9 234 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 OR8D2Q9GZM6 311 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 MCOLN1Q9GZU1 580 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 XYLT2Q9H1B5 865 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 EIF3GO75821 320 aaKnown RBP eCLIP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 DIO1P49895 249 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 CRISP1P54107 249 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 FUT2Q10981 343 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 GAS6Q14393 721 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 TMEM183BQ1AE95 376 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 OR9I1Q8NGQ6 314 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 AKT1S1Q96B36 256 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 CDCA4Q9BXL8 241 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 MIXL1Q9H2W2 232 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 SPATA31A3Q5VYP0 1347 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 TRDV1A0A1B0GX56 115 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 HYKKA2RU49 373 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 TREHO43280 583 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 UGDHO60701 494 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 VIPP01282 170 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 PCCBP05166 539 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ATXN1LP0C7T5 689 aaKnown RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 PRF1P14222 555 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 RNF144AP50876 292 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 C21orf58P58505 322 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 IRF9Q00978 393 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 AQP6Q13520 282 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ETFDHQ16134 617 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ADCK2Q7Z695 626 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 RBM23Q86U06 439 aaKnown RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 FAM131BQ86XD5 332 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ZNF738Q8NE65 137 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 CIPCQ9C0C6 399 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 PRO1933Q9H354 126 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 SIAH2O43255 324 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 B4GALT5O43286 388 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ZNF208O43345 1280 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 LMNTD1Q8N9Z9 388 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 NFKBIDQ8NI38 313 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 DDOQ99489 341 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 OPN3Q9H1Y3 402 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ZFP37Q9Y6Q3 630 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ZNF736B4DX44 427 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 FZD7O75084 574 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 GAAP10253 952 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 PTNP21246 168 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 OXTRP30559 389 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 GP2P55259 537 aaKnown RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 SIM1P81133 766 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 BCL2L1Q07817 233 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 RBM39Q14498 530 aaKnown RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 RBMS3Q6XE24 437 aaKnown RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 MAMDC2Q7Z304 686 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 EDEM1Q92611 657 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 TMEM74Q96NL1 305 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ST6GALNAC4Q9H4F1 302 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 KCNS2Q9ULS6 477 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 SGK494L7N484 410 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 GPRIN2O60269 458 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 CLK2P49760 499 aaKnown RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 HIST1H3AP68431 136 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 TAF9Q16594 264 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 LIPJQ5W064 366 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 KLBQ86Z14 1044 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 WDR20Q8TBZ3 569 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 CASTOR1Q8WTX7 329 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 SENP8Q96LD8 212 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 CDT1Q9H211 546 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ELP3Q9H9T3 547 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 TMEM27Q9HBJ8 222 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 MTCL1Q9Y4B5 1905 aaKnown RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 TEX13DA0A0J9YY54 714 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 TMEM235A6NFC5 223 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 TMEM233B4DJY2 109 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 INHBBP09529 407 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 BAATQ14032 418 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 ACTBL2Q562R1 376 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 GLB1L2Q8IW92 636 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 OR5D16Q8NGK9 328 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 OR2T4Q8NH00 348 aa4.69□□□□□ -1.66
VPS13D-213ENST00000613099 GRAPLQ8TC17 118 aaPredicted RBP4.69□□□□□ -1.66
VPS13D-213ENST00000613099 POM121Q96HA1 1249 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms