RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 FAM237AA0A1B0GTK4 181 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 SMIM30A4D0T7 59 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 OR6C68A6NDL8 312 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 C17orf100A8MU93 164 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 GPR89AB7ZAQ6 455 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 AKR1B15C9JRZ8 316 aaPredicted RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 CASQ2O14958 399 aaPredicted RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 GPC4O75487 556 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 GRAP2O75791 330 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 CALCAP01258 141 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 TFP02787 698 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 VIMP08670 466 aaKnown RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 FAM58BPP0C7Q3 252 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 GPR89BP0CG08 455 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 ADRA2CP18825 462 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 UGT1A1P22309 533 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 CAMLGP49069 296 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 HILS1P60008 231 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 SORDQ00796 357 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 BCL2L1Q07817 233 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 COX10Q12887 443 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 PRKAA1Q13131 559 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 GAMTQ14353 236 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 GALNT3Q14435 633 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 CYTH1Q15438 398 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 ACER2Q5QJU3 275 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 C1orf220Q5T0J3 134 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 C1orf185Q5T7R7 199 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 RIPPLY2Q5TAB7 128 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 C6orf163Q5TEZ5 329 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 FAM91A1Q658Y4 838 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 MFSD7Q6UXD7 560 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 RBM43Q6ZSC3 357 aaKnown RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 C11orf57Q6ZUT1 292 aaPredicted RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 COX15Q7KZN9 410 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF329Q86UD4 541 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 TSPAN33Q86UF1 283 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 CCDC65Q8IXS2 484 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 EXD1Q8NHP7 514 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 CFAP61Q8NHU2 1237 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 ST7LQ8TDW4 575 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 C2CD4CQ8TF44 421 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 SLC20A1Q8WUM9 679 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 TMEM255BQ8WV15 326 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 ECHDC3Q96DC8 303 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 PIK3IP1Q96FE7 263 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 TNFRSF13CQ96RJ3 184 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 CDRT15Q96T59 188 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 PIGQQ9BRB3 760 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 RIOK2Q9BVS4 552 aaKnown RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 CINPQ9BW66 212 aaPredicted RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 CACNG6Q9BXT2 260 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 CADM1Q9BY67 442 aaKnown RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 ISCUQ9H1K1 167 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 DEFB127Q9H1M4 99 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 NOL11Q9H8H0 719 aaKnown RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 FN3KRPQ9HA64 309 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 SAP30LQ9HAJ7 183 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 PIGVQ9NUD9 493 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 C3orf18Q9UK00 162 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 NXT1Q9UKK6 140 aaKnown RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 KCNS2Q9ULS6 477 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF148Q9UQR1 794 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 WDR37Q9Y2I8 494 aa3.9□□□□□ -1.79
LINC00540-201ENST00000611481 TDRKHQ9Y2W6 561 aaKnown RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 AAR2Q9Y312 384 aaKnown RBP3.9□□□□□ -1.79
LINC00540-201ENST00000611481 IGHV1-45A0A0A0MS14 117 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 C2orf81A6NN90 581 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 HSPB2A8KAH6 182 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 MAGEB17A8MXT2 336 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 H3BMH7 237 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 PSMD11O00231 422 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 SEC14L5O43304 696 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 HCRTR1O43613 425 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 NME2P1O60361 137 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 NEURL1O76050 574 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 NKX2-2O95096 273 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 BCL10O95999 233 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ADAP00813 363 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 SERPINC1P01008 464 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 HIST1H2ABP04908 130 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ETS1P14921 441 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF182P17025 639 aaPredicted RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF7P17097 686 aaPredicted RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 HIST1H2ADP20671 130 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 MYF6P23409 242 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 CXCR2P25025 360 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 DUSP1P28562 367 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 PCGF2P35227 344 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ACADSBP45954 432 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ASMTP46597 345 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 RGRP47804 291 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 ADARP55265 1226 aaKnown RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 VSX2P58304 361 aaPredicted RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 MLF1P58340 268 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 SNRPFP62306 86 aaKnown RBP3.89□□□□□ -1.79
LINC00540-201ENST00000611481 VLDLRP98155 873 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 KLC1Q07866 573 aa3.89□□□□□ -1.79
LINC00540-201ENST00000611481 IFT88Q13099 833 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms