RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 PIGUQ9H490 435 aa12.86□□□□□ -0.35
LIG1-218ENST00000599322 CALHM2Q9HA72 323 aa12.86□□□□□ -0.35
LIG1-218ENST00000599322 UBQLN4Q9NRR5 601 aa12.86□□□□□ -0.35
LIG1-218ENST00000599322 DUSP22Q9NRW4 184 aa12.86□□□□□ -0.35
LIG1-218ENST00000599322 PNPOQ9NVS9 261 aa12.86□□□□□ -0.35
LIG1-218ENST00000599322 GIN1Q9NXP7 522 aa12.86□□□□□ -0.35
LIG1-218ENST00000599322 HAO1Q9UJM8 370 aa12.86□□□□□ -0.35
LIG1-218ENST00000599322 CSMD2Q7Z408 3487 aa12.86□□□□□ -0.35
LIG1-218ENST00000599322 A0A0G2JNJ9 132 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 CD8B2A6NJW9 211 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 FADS1O60427 444 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 ANGPTL1O95841 491 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 SSTR2P30874 369 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 TIMP3P35625 211 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 DGKQP52824 942 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 C21orf58P58505 322 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.85□□□□□ -0.35
LIG1-218ENST00000599322 NSUN5P2Q63ZY6 315 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 NXNQ6DKJ4 435 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 RTL6Q6ICC9 239 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 CDC73Q6P1J9 531 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 FIGNL1Q6PIW4 674 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 P4HA3Q7Z4N8 544 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 MARCH3Q86UD3 253 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 RIMKLAQ8IXN7 391 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 SLC16A11Q8NCK7 471 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 DYDC1Q8WWB3 177 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 C16orf58Q96GQ5 468 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 WDYHV1Q96HA8 205 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 SORT1Q99523 831 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 TM9SF2Q99805 663 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 PIGQQ9BRB3 760 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 ACBD3Q9H3P7 528 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 MEAF6Q9HAF1 191 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 MED11Q9P086 117 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 ZNF629Q9UEG4 869 aaPredicted RBP12.85□□□□□ -0.35
LIG1-218ENST00000599322 Q9UFV3 132 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 FBXL2Q9UKC9 423 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 RPH3AQ9Y2J0 694 aaPredicted RBP12.85□□□□□ -0.35
LIG1-218ENST00000599322 CACNA1CQ13936 2221 aa12.85□□□□□ -0.35
LIG1-218ENST00000599322 OTOGQ6ZRI0 2925 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 PRSS51A0A1B0GVH4 220 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 NKX2-6A6NCS4 301 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 RNASET2O00584 256 aaKnown RBP12.84□□□□□ -0.35
LIG1-218ENST00000599322 KCNK2O95069 426 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 AGR2O95994 175 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 NGFRP08138 427 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 KITP10721 976 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 ACP2P11117 423 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 POU3F2P20265 443 aaPredicted RBP12.84□□□□□ -0.35
LIG1-218ENST00000599322 TBXA2RP21731 343 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 TCEA1P23193 301 aaKnown RBP12.84□□□□□ -0.35
LIG1-218ENST00000599322 S100A3P33764 101 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 OPRM1P35372 400 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 ANXA11P50995 505 aaKnown RBP12.84□□□□□ -0.35
LIG1-218ENST00000599322 WDR4P57081 412 aaKnown RBP12.84□□□□□ -0.35
LIG1-218ENST00000599322 RPS3AP61247 264 aaKnown RBP12.84□□□□□ -0.35
LIG1-218ENST00000599322 LRRC74AQ0VAA2 488 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 BCL2A1Q16548 175 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 DUSP5Q16690 384 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 GRAMD1BQ3KR37 738 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 GLYR1Q49A26 553 aaPredicted RBP12.84□□□□□ -0.35
LIG1-218ENST00000599322 ATAD3BQ5T9A4 648 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 OR4F3Q6IEY1 312 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 HDXQ7Z353 690 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 CAMKMTQ7Z624 323 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 TRIML2Q8N7C3 387 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 OR2M3Q8NG83 312 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 OR8J2Q8NGG1 315 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 OR4A15Q8NGL6 344 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 PSMA8Q8TAA3 256 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 HOXB13Q92826 284 aaPredicted RBP12.84□□□□□ -0.35
LIG1-218ENST00000599322 TLCD1Q96CP7 247 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 ZFP3Q96NJ6 502 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 UCK2Q9BZX2 261 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 C20orf27Q9GZN8 174 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 EXD2Q9NVH0 621 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 PKDREJQ9NTG1 2253 aa12.84□□□□□ -0.35
LIG1-218ENST00000599322 DCHS2Q6V1P9 2916 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 A0A087WZY1 265 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 UQCRHLA0A096LP55 91 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 RNF103-CHMP3A0A140T963 221 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 ALG1L2C9J202 215 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 GTPBP1O00178 669 aaKnown RBP12.83□□□□□ -0.36
LIG1-218ENST00000599322 CPSF4O95639 269 aaKnown RBP12.83□□□□□ -0.36
LIG1-218ENST00000599322 OXSR1O95747 527 aaPredicted RBP12.83□□□□□ -0.36
LIG1-218ENST00000599322 AK1P00568 194 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 MATN1P21941 496 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 MAP3K8P41279 467 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 ZNF41P51814 821 aaPredicted RBP12.83□□□□□ -0.36
LIG1-218ENST00000599322 GAS1P54826 345 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 CES4AQ5XG92 561 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 OGFOD2Q6N063 350 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 C6orf120Q7Z4R8 191 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 GRAMD2AQ8IUY3 354 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 FADS6Q8N9I5 356 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 FAM110BQ8TC76 370 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 LRRC8CQ8TDW0 803 aa12.83□□□□□ -0.36
LIG1-218ENST00000599322 RNF138Q8WVD3 245 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms