RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 STX5Q13190 355 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 CD226Q15762 336 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 MAPK14Q16539 360 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 SYPL1Q16563 259 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 C3AR1Q16581 482 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 ARHGAP11BQ3KRB8 267 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 WIPI1Q5MNZ9 446 aaPredicted RBP12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 C6orf10Q5SRN2 563 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 LRIF1Q5T3J3 769 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 C1QL3Q5VWW1 255 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 Q6ZPB1 254 aaPredicted RBP12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 YRDCQ86U90 279 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 PLCZ1Q86YW0 608 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 ANKFN1Q8N957 763 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 FADS6Q8N9I5 356 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 GATSQ8NAP1 163 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 DSN1Q9H410 356 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 IKZF5Q9H5V7 419 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 RMND5AQ9H871 391 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 TPT1P8Q9HAU6 139 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 ACKR4Q9NPB9 350 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 VAPAQ9P0L0 249 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 MRTO4Q9UKD2 239 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 MKLN1Q9UL63 735 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 TRIM33Q9UPN9 1127 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 EML6Q6ZMW3 1958 aa12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 GCN1Q92616 2671 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-217ENST00000598558 ALG1L2C9J202 215 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 ZIC3O60481 467 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 SLC19A2O60779 497 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 TRAPPC6AO75865 159 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 ANGPTL1O95841 491 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 HPNP05981 417 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 NGFRP08138 427 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 NUDT7P0C024 238 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 GDF1P27539 372 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 PSMD4P55036 377 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 GNGT1P63211 74 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 ELOAQ14241 798 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 KLHL26Q53HC5 615 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 AP1ARQ63HQ0 302 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 NCCRP1Q6ZVX7 275 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 HMGN2P46Q86SG4 172 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 DOLPP1Q86YN1 238 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 TRIML2Q8N7C3 387 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 FAM83FQ8NEG4 500 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 OR2M3Q8NG83 312 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 ZNF524Q96C55 264 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 NPAS1Q99742 590 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 TRIM8Q9BZR9 551 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 NMUR2Q9GZQ4 415 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 ZNF350Q9GZX5 532 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 UBQLN4Q9NRR5 601 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 QPCTLQ9NXS2 382 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 ERRFI1Q9UJM3 462 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 TINAGQ9UJW2 476 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 ABCG2Q9UNQ0 655 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 SLC6A5Q9Y345 797 aa12.93□□□□□ -0.34
SHKBP1-217ENST00000598558 NUP214P35658 2090 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 IGLV3-32A0A0A0MS00 114 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 TRGV5A0A0B4J1U4 118 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 GMNCA6NCL1 334 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 DUXAA6NLW8 204 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 NPIPA2E9PIF3 369 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 NPIPA3F8WFD2 350 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 CLIC1O00299 241 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 LRRTM2O43300 516 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 GMFGO60234 142 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 BCAS1O75363 584 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 CBR3O75828 277 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 ANP32DO95626 131 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 CHRM4P08173 479 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 ELAVL4P26378 380 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 LCN1P31025 176 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 PTGS2P35354 604 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 DCTP40126 519 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 KHKP50053 298 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 ATP12AP54707 1039 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 CHRNEQ04844 493 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 NDUFAF6Q330K2 333 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 FLYWCH1Q4VC44 716 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 DCST1Q5T197 706 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 TYW3Q6IPR3 259 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 C3P1Q6ZMU1 363 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 FRRS1Q6ZNA5 592 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 SPATA21Q7Z572 469 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 NEIL3Q8TAT5 605 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 ROPN1LQ96C74 230 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 ARSGQ96EG1 525 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 G6PC3Q9BUM1 346 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 TBL1XR1Q9BZK7 514 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 FAM107BQ9H098 131 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 SAP130Q9H0E3 1048 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 RUBCNLQ9H714 662 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 ARMCX1Q9P291 453 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 SH3BGRL2Q9UJC5 107 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 EXPH5Q8NEV8 1989 aa12.92□□□□□ -0.34
SHKBP1-217ENST00000598558 TRGV8A0A0C4DH27 118 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 SUSD5O60279 629 aa12.91□□□□□ -0.34
SHKBP1-217ENST00000598558 SNX3O60493 162 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms