RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 ZNF721Q8TF20 911 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 MCHR1Q99705 422 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 ENOPH1Q9UHY7 261 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 MGAT4BQ9UQ53 548 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 GDF9O60383 454 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 APOFQ13790 326 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 SF3A2Q15428 464 aaKnown RBP18.37■□□□□ 0.53
TRIM47-204ENST00000587339 MEP1AQ16819 746 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 PDZK1Q5T2W1 519 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 ZNF385CQ66K41 422 aaPredicted RBP18.37■□□□□ 0.53
TRIM47-204ENST00000587339 PLEKHM3Q6ZWE6 761 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 RANBP3LQ86VV4 465 aaPredicted RBP18.37■□□□□ 0.53
TRIM47-204ENST00000587339 PARP8Q8N3A8 854 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 BCORP1Q8N888 145 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 BMPERQ8N8U9 685 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 DIO2Q92813 273 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 HRASLS5Q96KN8 279 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 HSPE1-MOB4S4R3N1 261 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 GPR179Q6PRD1 2367 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 CDX4O14627 284 aaPredicted RBP18.36■□□□□ 0.53
TRIM47-204ENST00000587339 CYP7B1O75881 506 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 PPICP45877 212 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 RNF144AP50876 292 aaPredicted RBP18.36■□□□□ 0.53
TRIM47-204ENST00000587339 FOXL2P58012 376 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 FAAH2Q6GMR7 532 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 LANCL3Q6ZV70 420 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 OVCH1Q7RTY7 1134 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 LINC00471Q8N535 108 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 SLC38A4Q969I6 547 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 PITX2Q99697 317 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 ADNPQ9H2P0 1102 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 SEMA4GQ9NTN9 838 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 COPS7AQ9UBW8 275 aa18.36■□□□□ 0.53
TRIM47-204ENST00000587339 IDSB3KWA1 339 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 CPNE3O75131 537 aaKnown RBP18.35■□□□□ 0.53
TRIM47-204ENST00000587339 ONECUT2O95948 504 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 ZNF136P52737 540 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 TARDBPQ13148 414 aaKnown RBP eCLIP18.35■□□□□ 0.53
TRIM47-204ENST00000587339 TRAM2Q15035 370 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 CTU2Q2VPK5 515 aaKnown RBP18.35■□□□□ 0.53
TRIM47-204ENST00000587339 PGBD2Q6P3X8 592 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 KLHL17Q6TDP4 642 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 OR4K5Q8NGD3 323 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 ANKRD19PQ9H560 264 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 RXFP3Q9NSD7 469 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 PCDHGA10Q9Y5H3 936 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 COL5A1P20908 1838 aaPredicted RBP18.35■□□□□ 0.53
TRIM47-204ENST00000587339 TRIM64A6NGJ6 449 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 MEN1O00255 615 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 TFAP2AP05549 437 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 HEXBP07686 556 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 ZNF806P0C7X5 589 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 CCL4P13236 92 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 UGT2B15P54855 530 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 CDH15P55291 814 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.35■□□□□ 0.53
TRIM47-204ENST00000587339 C6orf141Q5SZD1 244 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 ZSCAN1Q8NBB4 408 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 MORN4Q8NDC4 146 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 HDAC2Q92769 488 aaKnown RBP18.35■□□□□ 0.53
TRIM47-204ENST00000587339 NUDT9Q9BW91 350 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 NTNG1Q9Y2I2 539 aa18.35■□□□□ 0.53
TRIM47-204ENST00000587339 C2orf92A0A1B0GVN3 265 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 E9PQ18 207 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 PRKNO60260 465 aaPredicted RBP18.34■□□□□ 0.53
TRIM47-204ENST00000587339 OR5F1O95221 314 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 GKN3PP0CG01 181 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 CD59P13987 128 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 RPL5P46777 297 aaKnown RBP18.34■□□□□ 0.53
TRIM47-204ENST00000587339 ATP12AP54707 1039 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 MC2RQ01718 297 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 ZNF141Q15928 474 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 DECR1Q16698 335 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 RBM48Q5RL73 367 aaKnown RBP18.34■□□□□ 0.53
TRIM47-204ENST00000587339 Q6ZPB1 254 aaPredicted RBP18.34■□□□□ 0.53
TRIM47-204ENST00000587339 OR1N1Q8NGS0 311 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 SLC41A3Q96GZ6 507 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 LCORQ96JN0 433 aaPredicted RBP18.34■□□□□ 0.53
TRIM47-204ENST00000587339 GAL3ST4Q96RP7 486 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 UCK2Q9BZX2 261 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 NXF5Q9H1B4 397 aaKnown RBP18.34■□□□□ 0.53
TRIM47-204ENST00000587339 C11orf16Q9NQ32 467 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 FBXO8Q9NRD0 319 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 PCDHGA6Q9Y5G7 932 aa18.34■□□□□ 0.53
TRIM47-204ENST00000587339 A0A087WUU8 490 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 A0A087WXM4 84 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 NPIPB9F8W1W9 429 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 PRG2P13727 222 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 AGXTP21549 392 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 DRD5P21918 477 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 GSSP48637 474 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 PSMD4P55036 377 aaKnown RBP18.33■□□□□ 0.53
TRIM47-204ENST00000587339 ESRRGP62508 458 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 TUBA4AP68366 448 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 CDK5R2Q13319 367 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 RBM44Q6ZP01 1051 aaKnown RBP18.33■□□□□ 0.53
TRIM47-204ENST00000587339 NAXDQ8IW45 347 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 CNIH3Q8TBE1 160 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 FBLIM1Q8WUP2 373 aa18.33■□□□□ 0.53
TRIM47-204ENST00000587339 METTL21AQ8WXB1 218 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms