RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CLDN6P56747 220 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 SMIM11AP58511 58 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 TAS2R41P59536 307 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 HOXC5Q00444 222 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 TCF15Q12870 199 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 BLMHQ13867 455 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 SEC23BQ15437 767 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 EIPR1Q53HC9 387 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 COLEC12Q5KU26 742 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 MRPL2Q5T653 305 aaKnown RBP9.73□□□□□ -0.85
SS18-217ENST00000580958 TTC23Q5W5X9 447 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 TMEM154Q6P9G4 183 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 ANKRD37Q7Z713 158 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 BCORP1Q8N888 145 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 ZSCAN1Q8NBB4 408 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 PMM1Q92871 262 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 LMF1Q96S06 567 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 FEVQ99581 238 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 PSD2Q9BQI7 771 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 FNDC11Q9BVV2 318 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 AKIRIN1Q9H9L7 192 aaPredicted RBP9.73□□□□□ -0.85
SS18-217ENST00000580958 NMNAT1Q9HAN9 279 aaPredicted RBP9.73□□□□□ -0.85
SS18-217ENST00000580958 PNPLA3Q9NST1 481 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 RLIMQ9NVW2 624 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 AKAP7Q9P0M2 348 aaPredicted RBP9.73□□□□□ -0.85
SS18-217ENST00000580958 TMCC3Q9ULS5 477 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 CFL2Q9Y281 166 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 LOXL2Q9Y4K0 774 aa9.73□□□□□ -0.85
SS18-217ENST00000580958 LOC100130705A0A1B0GUX0 176 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 SYNDIG1LA6NDD5 238 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 IDSB3KWA1 339 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 FAAHO00519 579 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 AP3D1O14617 1153 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 CCNYL3P0C7X3 344 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 CYP4B1P13584 511 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 ANXA8P13928 327 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 NID1P14543 1247 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 CDH2P19022 906 aaPredicted RBP9.72□□□□□ -0.85
SS18-217ENST00000580958 ITIH1P19827 911 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 SLC5A2P31639 672 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 POLR2IP36954 125 aaKnown RBP9.72□□□□□ -0.85
SS18-217ENST00000580958 ETV5P41161 510 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 PPICP45877 212 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 CLK3P49761 638 aaKnown RBP9.72□□□□□ -0.85
SS18-217ENST00000580958 TPD52P55327 224 aaPredicted RBP9.72□□□□□ -0.85
SS18-217ENST00000580958 E2F1Q01094 437 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 INSM1Q01101 510 aaPredicted RBP9.72□□□□□ -0.85
SS18-217ENST00000580958 DCST1Q5T197 706 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 PDZK1Q5T2W1 519 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 RNF220Q5VTB9 566 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 MRPL14Q6P1L8 145 aaKnown RBP9.72□□□□□ -0.85
SS18-217ENST00000580958 PODNL1Q6PEZ8 512 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 PLEKHM3Q6ZWE6 761 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 AMER2Q8N7J2 671 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 ZNF614Q8N883 585 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 AQP11Q8NBQ7 271 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 MORN4Q8NDC4 146 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 OR1N1Q8NGS0 311 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 MR1Q95460 341 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 FKBP10Q96AY3 582 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 LCORQ96JN0 433 aaPredicted RBP9.72□□□□□ -0.85
SS18-217ENST00000580958 MUS81Q96NY9 551 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 GAL3ST4Q96RP7 486 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 SPSB2Q99619 263 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 MCHR1Q99705 422 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 CDC6Q99741 560 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 MESP1Q9BRJ9 268 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 FUZQ9BT04 418 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 CRB3Q9BUF7 120 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 G6PC3Q9BUM1 346 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 STRADBQ9C0K7 418 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 NXF5Q9H1B4 397 aaKnown RBP9.72□□□□□ -0.85
SS18-217ENST00000580958 SLC26A1Q9H2B4 701 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.72□□□□□ -0.85
SS18-217ENST00000580958 MAN2C1Q9NTJ4 1040 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 NCDNQ9UBB6 729 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 COPS7AQ9UBW8 275 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 GPN3Q9UHW5 284 aaPredicted RBP9.72□□□□□ -0.85
SS18-217ENST00000580958 SCOCQ9UIL1 159 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 POFUT2Q9Y2G5 429 aa9.72□□□□□ -0.85
SS18-217ENST00000580958 KNTC1P50748 2209 aa9.71□□□□□ -0.85
SS18-217ENST00000580958 A0A0C4DFX4 3053 aa9.71□□□□□ -0.85
SS18-217ENST00000580958 TEX51A0A1B0GUA7 166 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 CDHR4A6H8M9 788 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 ARRDC5A6NEK1 342 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 FRG2CA6NGY1 282 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 SAGE2PA6NJ88 616 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 NPIPB9F8W1W9 429 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 TMX2-CTNND1H3BSU7 103 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 BCKDKO14874 412 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 SLC16A6O15403 523 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 UGT2B11O75310 529 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 BCAS1O75363 584 aaPredicted RBP9.71□□□□□ -0.86
SS18-217ENST00000580958 CSO75390 466 aaKnown RBP9.71□□□□□ -0.86
SS18-217ENST00000580958 TNFAIP8O95379 198 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 GKN3PP0CG01 181 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 ZNF136P52737 540 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 ATP12AP54707 1039 aa9.71□□□□□ -0.86
SS18-217ENST00000580958 PSMD4P55036 377 aaKnown RBP9.71□□□□□ -0.86
SS18-217ENST00000580958 DCAF7P61962 342 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms