RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 SOX8P57073 446 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 EEF1A1P68104 462 aaKnown RBP14.08□□□□□ -0.16
SS18-215ENST00000580642 IL10RAQ13651 578 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 GLIPR1L2Q4G1C9 344 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 KLHL26Q53HC5 615 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 FBXW10Q5XX13 1052 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 OPN5Q6U736 354 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 VTCN1Q7Z7D3 282 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 ZDHHC21Q8IVQ6 265 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 MISPQ8IVT2 679 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 GPALPP1Q8IXQ4 340 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 ZNF440Q8IYI8 595 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 FAM86B1Q8N7N1 296 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 SMYD1Q8NB12 490 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 GPR32P1Q8NGA4 272 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 FGF11Q92914 225 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 FAM122AQ96E09 287 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 OMA1Q96E52 524 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 SECISBP2Q96T21 854 aaKnown RBP14.08□□□□□ -0.16
SS18-215ENST00000580642 ARHGDIGQ99819 225 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 MESP1Q9BRJ9 268 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 OSBPL10Q9BXB5 764 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 VCX3BQ9H321 246 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 ATP13A2Q9NQ11 1180 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 IL17BQ9UHF5 180 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 SLC35A3Q9Y2D2 325 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 DTNAQ9Y4J8 743 aa14.08□□□□□ -0.16
SS18-215ENST00000580642 CDHR4A6H8M9 788 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 H0Y3Z8 333 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 SCDO00767 359 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 CASQ2O14958 399 aaPredicted RBP14.07□□□□□ -0.16
SS18-215ENST00000580642 CLOCKO15516 846 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 FMO6PO60774 539 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 REM1O75628 298 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 NADKO95544 446 aaPredicted RBP14.07□□□□□ -0.16
SS18-215ENST00000580642 BAG2O95816 211 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 OPN1SWP03999 348 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 FBXO45P0C2W1 286 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 HPGDP15428 266 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 RHCEP18577 417 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 IFNA8P32881 189 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 CLK3P49761 638 aaKnown RBP14.07□□□□□ -0.16
SS18-215ENST00000580642 ERFP50548 548 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 SMIM11AP58511 58 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 RPP38P78345 283 aaKnown RBP14.07□□□□□ -0.16
SS18-215ENST00000580642 CLN3Q13286 438 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 NRF1Q16656 503 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 DCAF10Q5QP82 559 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 FAM69BQ5VUD6 431 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 TMEM81Q6P7N7 255 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 GALNT10Q86SR1 603 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 CYP4Z1Q86W10 505 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 TMEM102Q8N9M5 508 aaPredicted RBP14.07□□□□□ -0.16
SS18-215ENST00000580642 ZNF248Q8NDW4 579 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 SNIP1Q8TAD8 396 aaKnown RBP14.07□□□□□ -0.16
SS18-215ENST00000580642 ZG16BQ96DA0 208 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 TMCO6Q96DC7 493 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 ZNF300Q96RE9 604 aaPredicted RBP14.07□□□□□ -0.16
SS18-215ENST00000580642 EXOSC3Q9NQT5 275 aaKnown RBP14.07□□□□□ -0.16
SS18-215ENST00000580642 TEKT2Q9UIF3 430 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 RIMS3Q9UJD0 308 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 KLK13Q9UKR3 277 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 SH3GLB1Q9Y371 365 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 FAM32AQ9Y421 112 aaKnown RBP14.07□□□□□ -0.16
SS18-215ENST00000580642 ENPP4Q9Y6X5 453 aa14.07□□□□□ -0.16
SS18-215ENST00000580642 PIEZO1Q92508 2521 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 DMXL1Q9Y485 3027 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 SERINC4A6NH21 518 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 ALG1L2C9J202 215 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 ADAMDEC1O15204 470 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 PRKNO60260 465 aaPredicted RBP14.06□□□□□ -0.16
SS18-215ENST00000580642 DNAJB5O75953 348 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 PLA2G5P39877 138 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 MLF1P58340 268 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 FGFBP1Q14512 234 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 NNATQ16517 81 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 IQCCQ4KMZ1 466 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 TCTN3Q6NUS6 607 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 RPS19BP1Q86WX3 136 aaKnown RBP14.06□□□□□ -0.16
SS18-215ENST00000580642 VRK2Q86Y07 508 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 CATSPER1Q8NEC5 780 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 TOR1AIP2Q8NFQ8 470 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 RNF138Q8WVD3 245 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 NRBF2Q96F24 287 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 ADOQ96SZ5 270 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 SCNM1Q9BWG6 230 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 FBXO34Q9NWN3 711 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 NDUFAF4Q9P032 175 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 KCNE5Q9UJ90 142 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 V9GYQ6 96 aa14.06□□□□□ -0.16
SS18-215ENST00000580642 ZNF891A8MT65 544 aaPredicted RBP14.05□□□□□ -0.16
SS18-215ENST00000580642 TP53I11O14683 189 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 TPST1O60507 370 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 TIPRLO75663 272 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 UTS2O95399 124 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 CST1P01037 141 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 VLDLRP98155 873 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 SNTA1Q13424 505 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 ATP1A4Q13733 1029 aa14.05□□□□□ -0.16
SS18-215ENST00000580642 TGIF1Q15583 401 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms