RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 CSF3RQ99062 836 aa9.42□□□□□ -0.9
SS18-210ENST00000578700 YIPF2Q9BWQ6 316 aa9.42□□□□□ -0.9
SS18-210ENST00000578700 LHPPQ9H008 270 aa9.42□□□□□ -0.9
SS18-210ENST00000578700 SOX17Q9H6I2 414 aaPredicted RBP9.42□□□□□ -0.9
SS18-210ENST00000578700 REEP1Q9H902 201 aa9.42□□□□□ -0.9
SS18-210ENST00000578700 EQTNQ9NQ60 294 aa9.42□□□□□ -0.9
SS18-210ENST00000578700 GPATCH2Q9NW75 528 aa9.42□□□□□ -0.9
SS18-210ENST00000578700 HCN3Q9P1Z3 774 aa9.42□□□□□ -0.9
SS18-210ENST00000578700 SLC13A4Q9UKG4 626 aa9.42□□□□□ -0.9
SS18-210ENST00000578700 A0A087WV62 115 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 A0A0G2JPF8 293 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 SYNDIG1LA6NDD5 238 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 WASHC1A8K0Z3 465 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 HNRNPCL2B2RXH8 293 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 HNRNPCL3B7ZW38 293 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 HMGN4O00479 90 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 CCL21O00585 134 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 CTNSO60931 367 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 PGM3O95394 542 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 HPRP00739 348 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 IFNW1P05000 195 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 HNRNPCL4P0DMR1 293 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 ZNF26P17031 533 aaPredicted RBP9.41□□□□□ -0.9
SS18-210ENST00000578700 MMP11P24347 488 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 MAGEA2P43356 314 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 GABRA4P48169 554 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 HSD17B7P56937 341 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 ARG2P78540 354 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 SERTAD2Q14140 314 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 ZNHIT3Q15649 155 aaPredicted RBP9.41□□□□□ -0.9
SS18-210ENST00000578700 GPAT3Q53EU6 434 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 OR2T5Q6IEZ7 315 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 GFRALQ6UXV0 394 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 PIWIL3Q7Z3Z3 882 aaKnown RBP9.41□□□□□ -0.9
SS18-210ENST00000578700 STK32CQ86UX6 486 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 CYP4Z1Q86W10 505 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 LGI4Q8N135 537 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 METTL27Q8N6F8 245 aaPredicted RBP9.41□□□□□ -0.9
SS18-210ENST00000578700 OR2T29Q8NH02 315 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 OR5K1Q8NHB7 308 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 MAGEE2Q8TD90 523 aaPredicted RBP9.41□□□□□ -0.9
SS18-210ENST00000578700 SLC38A5Q8WUX1 472 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.41□□□□□ -0.9
SS18-210ENST00000578700 ITLN2Q8WWU7 325 aaPredicted RBP9.41□□□□□ -0.9
SS18-210ENST00000578700 KAT2AQ92830 837 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 ZNF597Q96LX8 424 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 ZNF570Q96NI8 536 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 DGAT2Q96PD7 388 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 BTBD2Q9BX70 525 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 PRTFDC1Q9NRG1 225 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 SLC22A11Q9NSA0 550 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 SMPD3Q9NY59 655 aaPredicted RBP9.41□□□□□ -0.9
SS18-210ENST00000578700 PLA2G3Q9NZ20 509 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 SEC14L3Q9UDX4 400 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 AP4B1Q9Y6B7 739 aa9.41□□□□□ -0.9
SS18-210ENST00000578700 H3BMH7 237 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 hCG_2039718K7EN88 272 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 SOCS6O14544 535 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 ADAMDEC1O15204 470 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 DENRO43583 198 aaKnown RBP9.4□□□□□ -0.9
SS18-210ENST00000578700 FGF17O60258 216 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 B4GALT2O60909 372 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 LDB3O75112 727 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 PRSS23O95084 383 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 F10P00742 488 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 C1QCP02747 245 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 OPN1SWP03999 348 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 ALOX5P09917 674 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 CDH2P19022 906 aaPredicted RBP9.4□□□□□ -0.9
SS18-210ENST00000578700 TNNI3P19429 210 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 DNAJA1P31689 397 aaKnown RBP9.4□□□□□ -0.9
SS18-210ENST00000578700 IFNA8P32881 189 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 RAD23AP54725 363 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 PCBP3P57721 371 aaKnown RBP9.4□□□□□ -0.9
SS18-210ENST00000578700 ID2Q02363 134 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 EEF1A2Q05639 463 aaKnown RBP9.4□□□□□ -0.9
SS18-210ENST00000578700 GK3PQ14409 553 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 LTB4RQ15722 352 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 OTUD3Q5T2D3 398 aaPredicted RBP9.4□□□□□ -0.9
SS18-210ENST00000578700 B3GNTL1Q67FW5 361 aaPredicted RBP9.4□□□□□ -0.9
SS18-210ENST00000578700 ZCCHC12Q6PEW1 402 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 KIRREL2Q6UWL6 708 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 IGFL2Q6UWQ7 119 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 ISLR2Q6UXK2 745 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 OVCH1Q7RTY7 1134 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 GALNT10Q86SR1 603 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 GALNT12Q8IXK2 581 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 PRSS58Q8IYP2 241 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 OR2L13Q8N349 312 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 OR10Q1Q8NGQ4 319 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 OR51Q1Q8NH59 317 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 ZNF675Q8TD23 568 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 SLC9A6Q92581 669 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 RELTQ969Z4 430 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 PEX11GQ96HA9 241 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 RDH12Q96NR8 316 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 RBM4BQ9BQ04 359 aaKnown RBP9.4□□□□□ -0.9
SS18-210ENST00000578700 YIPF4Q9BSR8 244 aa9.4□□□□□ -0.9
SS18-210ENST00000578700 RBM4Q9BWF3 364 aaKnown RBP9.4□□□□□ -0.9
SS18-210ENST00000578700 CHST11Q9NPF2 352 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms