RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 MTRF1O75570 445 aaKnown RBP9.4□□□□□ -0.91
VPS53-220ENST00000576149 APOL3O95236 402 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 THBS1P07996 1170 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 MAGEA10P43363 369 aaPredicted RBP9.4□□□□□ -0.91
VPS53-220ENST00000576149 GPR4P46093 362 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 TFF2Q03403 129 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 KRR1Q13601 381 aaKnown RBP9.4□□□□□ -0.91
VPS53-220ENST00000576149 TPBGQ13641 420 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 OR2G6Q5TZ20 316 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 SLC30A6Q6NXT4 461 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 LAPTM4BQ86VI4 370 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 TRIM48Q8IWZ4 208 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 TMEM255BQ8WV15 326 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 FAM3CQ92520 227 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 TM9SF4Q92544 642 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 RSC1A1Q92681 617 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 ZNF350Q9GZX5 532 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 KLHL25Q9H0H3 589 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 CACYBPQ9HB71 228 aaKnown RBP9.4□□□□□ -0.91
VPS53-220ENST00000576149 NLGN3Q9NZ94 848 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 LUZP4Q9P127 313 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 MRPS2Q9Y399 296 aaKnown RBP9.4□□□□□ -0.91
VPS53-220ENST00000576149 SCN3AQ9NY46 2000 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 CENPVL1A0A0U1RR11 272 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.39□□□□□ -0.91
VPS53-220ENST00000576149 IQCMA0A1B0GVH7 501 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.39□□□□□ -0.91
VPS53-220ENST00000576149 ZNF860A6NHJ4 632 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 H0YGG7 62 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 PLD2O14939 933 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 KCNK2O95069 426 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 IL1AP01583 271 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 TSPAN19P0C672 248 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 AKT2P31751 481 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 LSSP48449 732 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 ZNF136P52737 540 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 ARF3P61204 181 aaPredicted RBP9.39□□□□□ -0.91
VPS53-220ENST00000576149 ID2Q02363 134 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 PLK5Q496M5 336 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 EIPR1Q53HC9 387 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 CCNJQ5T5M9 372 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 AADACL4Q5VUY2 407 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 ZNF620Q6ZNG0 422 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 TMEFF1Q8IYR6 380 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 BAHD1Q8TBE0 780 aaPredicted RBP9.39□□□□□ -0.91
VPS53-220ENST00000576149 PATE1Q8WXA2 126 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 RFKQ969G6 155 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 RERGQ96A58 199 aaPredicted RBP9.39□□□□□ -0.91
VPS53-220ENST00000576149 SLC25A46Q96AG3 418 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 IL21RQ9HBE5 538 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 MED17Q9NVC6 651 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 EVA1BQ9NVM1 165 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 SLC7A7Q9UM01 511 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 SF3B6Q9Y3B4 125 aaKnown RBP9.39□□□□□ -0.91
VPS53-220ENST00000576149 ENTPD2Q9Y5L3 495 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 PIAS3Q9Y6X2 628 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 A0A087WV62 115 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 SLC35F4A4IF30 521 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 C2orf74A8MZ97 194 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 FGF17O60258 216 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 PIP5K1CO60331 668 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 LDB3O75112 727 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 CDRT1O95170 752 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 DLGAP3O95886 979 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 CH25HO95992 272 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 ATP1B1P05026 303 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 LIMS3P0CW19 117 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 LIMS4P0CW20 117 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 F5P12259 2224 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 SPNP16150 400 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 RPS4Y1P22090 263 aaKnown RBP9.39□□□□□ -0.91
VPS53-220ENST00000576149 CDH11P55287 796 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 DEFA1P59665 94 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 DEFA3P59666 94 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 RUNX1T1Q06455 604 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 ILF3Q12906 894 aaKnown RBP eCLIP9.39□□□□□ -0.91
VPS53-220ENST00000576149 GPR68Q15743 365 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 MAPK14Q16539 360 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 TMEM44Q2T9K0 475 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 PGGHGQ32M88 737 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 Q6ZSR6 202 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 PRSS41Q7RTY9 318 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 SHISA5Q8N114 240 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 ZNF619Q8N2I2 560 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 CLDN22Q8N7P3 220 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 DNAJC5GQ8N7S2 189 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 ZNF485Q8NCK3 441 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 GALNT6Q8NCL4 622 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 GATAD2BQ8WXI9 593 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 ASB15Q8WXK1 588 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 HPS1Q92902 700 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 WDFY2Q96P53 400 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 PRSS27Q9BQR3 290 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 TEX12Q9BXU0 123 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 MIR1-1HGQ9H1L0 117 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 ADAP2Q9NPF8 381 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 DUSP22Q9NRW4 184 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 POT1Q9NUX5 634 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 ERVK13-1Q9NX77 482 aa9.39□□□□□ -0.91
VPS53-220ENST00000576149 CPNE7Q9UBL6 633 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms