RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 MID1IP1Q9NPA3 183 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 WBP11Q9Y2W2 641 aaKnown RBP18.93■□□□□ 0.62
VPS53-216ENST00000574029 HEATR5AQ86XA9 2040 aa18.93■□□□□ 0.62
VPS53-216ENST00000574029 DSCAMO60469 2012 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 UTS2O95399 124 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 FCGR2AP12318 317 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 NTSP30990 170 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 PRR5P85299 388 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 APOOLQ6UXV4 268 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 ACMSDQ8TDX5 336 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 NUDT8Q8WV74 236 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 IGFBPL1Q8WX77 278 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.92■□□□□ 0.621e-7■■■■□ 26.6
VPS53-216ENST00000574029 PERPQ96FX8 193 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 TBL1XR1Q9BZK7 514 aa18.92■□□□□ 0.62
VPS53-216ENST00000574029 POLR3HQ9Y535 204 aaPredicted RBP18.92■□□□□ 0.62
VPS53-216ENST00000574029 FN1P02751 2386 aaKnown RBP18.91■□□□□ 0.62
VPS53-216ENST00000574029 TTC36A6NLP5 189 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 ANGPTL1O95841 491 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 IGKV1D-16P01601 117 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 THBDP07204 575 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 GSTA1P08263 222 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 FAM153BP0C7A2 387 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 SGCBQ16585 318 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 FAM153CQ494X1 144 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 ANKRD34AQ69YU3 496 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 IKBIPQ70UQ0 350 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 TRIM46Q7Z4K8 759 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 GSX2Q9BZM3 304 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 KLHL4Q9C0H6 718 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 C3orf14Q9HBI5 128 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 PLSCR4Q9NRQ2 329 aa18.91■□□□□ 0.62
VPS53-216ENST00000574029 GXYLT2A0PJZ3 443 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 TRIM64A6NGJ6 449 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 TRIM64BA6NI03 449 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 GOLGA8RI6L899 631 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 GABRA3P34903 492 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 SLC6A8P48029 635 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 RFX3P48380 749 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 IMPG1Q17R60 797 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.9■□□□□ 0.62
VPS53-216ENST00000574029 GRAMD1BQ3KR37 738 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 OR6K3Q8NGY3 331 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 HOXB13Q92826 284 aaPredicted RBP18.9■□□□□ 0.62
VPS53-216ENST00000574029 CCDC126Q96EE4 140 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 ARID1AO14497 2285 aa18.9■□□□□ 0.62
VPS53-216ENST00000574029 SHISA8B8ZZ34 492 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 SMAD7O15105 426 aaKnown RBP18.89■□□□□ 0.61
VPS53-216ENST00000574029 KLF4O43474 513 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 RSL1D1O76021 490 aaKnown RBP18.89■□□□□ 0.61
VPS53-216ENST00000574029 KCNH1O95259 989 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 PPP3CBP16298 524 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 ZNF17P17021 662 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 IL11P20809 199 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 MAP3K8P41279 467 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 EXOC3L2Q2M3D2 409 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 BEX5Q5H9J7 111 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 NOXRED1Q6NXP6 359 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 PRIMA1Q86XR5 153 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 CCNYL1Q8N7R7 359 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 PIK3R3Q92569 461 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 GMPPAQ96IJ6 420 aaPredicted RBP18.89■□□□□ 0.61
VPS53-216ENST00000574029 ANKZF1Q9H8Y5 726 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 STOML1Q9UBI4 398 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 EMCNQ9ULC0 261 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 EMC9Q9Y3B6 208 aa18.89■□□□□ 0.61
VPS53-216ENST00000574029 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.88■□□□□ 0.61
VPS53-216ENST00000574029 G3V2L1 256 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 H3BQF6 201 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 EIF1AYO14602 144 aaKnown RBP18.88■□□□□ 0.61
VPS53-216ENST00000574029 RIPK2O43353 540 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 GMFGO60234 142 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 SS18L1O75177 396 aaPredicted RBP18.88■□□□□ 0.61
VPS53-216ENST00000574029 SLU7O95391 586 aaKnown RBP18.88■□□□□ 0.61
VPS53-216ENST00000574029 PYGBP11216 843 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 PAX1P15863 534 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 EIF1AXP47813 144 aaKnown RBP18.88■□□□□ 0.61
VPS53-216ENST00000574029 PTH2RP49190 550 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 NAA20P61599 178 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 ZYG11AQ6WRX3 759 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 PLEKHM3Q6ZWE6 761 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 ZNF551Q7Z340 670 aaPredicted RBP18.88■□□□□ 0.61
VPS53-216ENST00000574029 OR10D3Q8NH80 312 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 MZB1Q8WU39 189 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 ADGRG7Q96K78 797 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 PRRG4Q9BZD6 226 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 HHATLQ9HCP6 504 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 PAQR5Q9NXK6 330 aaPredicted RBP18.88■□□□□ 0.61
VPS53-216ENST00000574029 DCDC2Q9UHG0 476 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 VDAC3Q9Y277 283 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 CCL27Q9Y4X3 112 aa18.88■□□□□ 0.61
VPS53-216ENST00000574029 A0A087WZY1 265 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 ALG1L2C9J202 215 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 NKX2-2O95096 273 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 PRPS2P11908 318 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 PCSK6P29122 969 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 KIAA0040Q15053 153 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 CTU2Q2VPK5 515 aaKnown RBP18.87■□□□□ 0.61
VPS53-216ENST00000574029 STAC2Q6ZMT1 411 aa18.87■□□□□ 0.61
VPS53-216ENST00000574029 SH2D5Q6ZV89 423 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms