RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 HIVEP2P31629 2446 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 MAGEA13PA6NCF6 341 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 MYO1GB0I1T2 1018 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 MSTNO14793 375 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 PCDH7O60245 1069 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 BCAS2O75934 225 aaPredicted RBP6.06□□□□□ -1.44
VPS53-213ENST00000572334 SUPT7LO94864 414 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 SNRPAP09012 282 aaKnown RBP6.06□□□□□ -1.44
VPS53-213ENST00000572334 TROVE2P10155 538 aaKnown RBP eCLIP6.06□□□□□ -1.44
VPS53-213ENST00000572334 DRD2P14416 443 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 IMPDH1P20839 514 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 TCEA1P23193 301 aaKnown RBP6.06□□□□□ -1.44
VPS53-213ENST00000572334 DPP4P27487 766 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 TIA1P31483 386 aaKnown RBP eCLIP6.06□□□□□ -1.44
VPS53-213ENST00000572334 EVI2BP34910 448 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 MAP3K8P41279 467 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 PCYT1AP49585 367 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 PRKAA2P54646 552 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 CLDN20P56880 219 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 GUCY1A3Q02108 690 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 LTBQ06643 244 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 KEAP1Q14145 624 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 RASA2Q15283 850 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 BCL2A1Q16548 175 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 TMEM44Q2T9K0 475 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 FAM71E1Q6IPT2 247 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 SCIMPQ6UWF3 145 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 ENPP6Q6UWR7 440 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 APOOLQ6UXV4 268 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 SH2D5Q6ZV89 423 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 GPRIN3Q6ZVF9 776 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 Q71RC1 249 aaPredicted RBP6.06□□□□□ -1.44
VPS53-213ENST00000572334 LARP4Q71RC2 724 aaKnown RBP eCLIP6.06□□□□□ -1.44
VPS53-213ENST00000572334 SLC44A2Q8IWA5 706 aaPredicted RBP6.06□□□□□ -1.44
VPS53-213ENST00000572334 ALDH16A1Q8IZ83 802 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 OR5M1Q8NGP8 315 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 PPP1R14CQ8TAE6 165 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 IGFBPL1Q8WX77 278 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 FIG4Q92562 907 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 HOXB13Q92826 284 aaPredicted RBP6.06□□□□□ -1.44
VPS53-213ENST00000572334 TMCO6Q96DC7 493 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 L3HYPDHQ96EM0 354 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 LRRC46Q96FV0 321 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 SFXN2Q96NB2 322 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 FMO2Q99518 471 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 NPAS1Q99742 590 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 KLHDC3Q9BQ90 382 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 PIGQQ9BRB3 760 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 YIPF4Q9BSR8 244 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 FAIM2Q9BWQ8 316 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 EBPLQ9BY08 206 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 TXLNGYQ9BZA5 131 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 PIGMQ9H3S5 423 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 DSN1Q9H410 356 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 BEX4Q9NWD9 120 aaPredicted RBP6.06□□□□□ -1.44
VPS53-213ENST00000572334 C6orf203Q9P0P8 240 aaPredicted RBP6.06□□□□□ -1.44
VPS53-213ENST00000572334 PACSIN3Q9UKS6 424 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 PSME2Q9UL46 239 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 LRCH1Q9Y2L9 728 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 ZNF337Q9Y3M9 751 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 CCL27Q9Y4X3 112 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 ZNF780BQ9Y6R6 833 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 CHD3Q12873 2000 aaKnown RBP6.06□□□□□ -1.44
VPS53-213ENST00000572334 COL6A5A8TX70 2615 aa6.06□□□□□ -1.44
VPS53-213ENST00000572334 SVEP1Q4LDE5 3571 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 ATRQ13535 2644 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 A0A087WV62 115 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 IGLV3-32A0A0A0MS00 114 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 OR2M5A3KFT3 312 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 SHISA8B8ZZ34 492 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 G3V2L1 256 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 GOLGA8RI6L899 631 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 UPK1AO00322 258 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 SCO2O43819 266 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 PFDN1O60925 122 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 ULK1O75385 1050 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 ESRRBO95718 433 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 IGKV1D-16P01601 117 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 KRT6AP02538 564 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 KRT6BP04259 564 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 JUNP05412 331 aaKnown RBP6.05□□□□□ -1.44
VPS53-213ENST00000572334 CRHP06850 196 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 ABHD2P08910 425 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 INHBBP09529 407 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 DDCP20711 480 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 CRYGSP22914 178 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 ATP5F1P24539 256 aaPredicted RBP6.05□□□□□ -1.44
VPS53-213ENST00000572334 MC3RP41968 323 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 KRT6CP48668 564 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 DSCR4P56555 118 aaPredicted RBP6.05□□□□□ -1.44
VPS53-213ENST00000572334 BTKQ06187 659 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 GAB1Q13480 694 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 EFR3AQ14156 821 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 KIAA0040Q15053 153 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 SPIN4Q56A73 249 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 AAGABQ6PD74 315 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 BIVMQ86UB2 503 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 GGNQ86UU5 652 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 GRAMD2AQ8IUY3 354 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 OR2L13Q8N349 312 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms