RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RPS5P46782 204 aaKnown RBP21.24■□□□□ 0.99
VPS53-211ENST00000571805 CLDN2P57739 230 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 RUNX2Q13950 521 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TCEA2Q15560 299 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D3CQ6IPX1 549 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 PEX5LQ8IYB4 626 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D3Q8IZP1 549 aaPredicted RBP21.24■□□□□ 0.99
VPS53-211ENST00000571805 OR4K14Q8NGD5 310 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 TP53INP1Q96A56 240 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 SAMD8Q96LT4 415 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 PHOX2BQ99453 314 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 CERS4Q9HA82 394 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 ZNF232Q9UNY5 417 aa21.24■□□□□ 0.99
VPS53-211ENST00000571805 SHISA3A0PJX4 238 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 CASKO14936 926 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 PLA2G10O15496 165 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 NDUFV2P19404 249 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 AK4P27144 223 aaPredicted RBP21.23■□□□□ 0.99
VPS53-211ENST00000571805 GDI1P31150 447 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 EEF1A1P68104 462 aaKnown RBP21.23■□□□□ 0.99
VPS53-211ENST00000571805 ZNF800Q2TB10 664 aaPredicted RBP eCLIP21.23■□□□□ 0.99
VPS53-211ENST00000571805 ITPRIPL2Q3MIP1 535 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 PYDC2Q56P42 97 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 VASNQ6EMK4 673 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 RDH10Q8IZV5 341 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 KLHL36Q8N4N3 616 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 OR2T33Q8NG76 320 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 OR52N1Q8NH53 320 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 SDF2Q99470 211 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 PRSS27Q9BQR3 290 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 TMED9Q9BVK6 235 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 JAM3Q9BX67 310 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 HDHD5Q9BXW7 423 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 HINT3Q9NQE9 182 aaKnown RBP21.23■□□□□ 0.99
VPS53-211ENST00000571805 J3QRE1 110 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 SOCS6O14544 535 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 CELP19835 753 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 SSTR4P31391 388 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 DDOSTP39656 456 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 PPP3R1P63098 170 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 SIM1P81133 766 aaPredicted RBP21.23■□□□□ 0.99
VPS53-211ENST00000571805 DAB2P98082 770 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 ZNF791Q3KP31 576 aaPredicted RBP21.23■□□□□ 0.99
VPS53-211ENST00000571805 GALNT12Q8IXK2 581 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 SPRYD4Q8WW59 207 aaPredicted RBP21.23■□□□□ 0.99
VPS53-211ENST00000571805 OR1E3Q8WZA6 343 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 OR2A5Q96R48 311 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 COQ7Q99807 217 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 TMEM74BQ9NUR3 256 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 COMMD3Q9UBI1 195 aa21.23■□□□□ 0.99
VPS53-211ENST00000571805 TFECO14948 347 aaPredicted RBP21.22■□□□□ 0.99
VPS53-211ENST00000571805 P2RX6O15547 441 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 HMGN1P05114 100 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 ZGLP1P0C6A0 271 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 PTNP21246 168 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 PPP2CBP62714 309 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 PPP2CAP67775 309 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 DUSP8Q13202 625 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 CPOQ8IVL8 374 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 ATP6V1C2Q8NEY4 427 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 SERINC2Q96SA4 455 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 SECISBP2Q96T21 854 aaKnown RBP21.22■□□□□ 0.99
VPS53-211ENST00000571805 ATF6BQ99941 703 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 UBQLN3Q9H347 655 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 PPP1R3EQ9H7J1 279 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 MARCH7Q9H992 704 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 TBC1D17Q9HA65 648 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 PHF11Q9UIL8 331 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 HMX3A6NHT5 357 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 RGS13O14921 159 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 AKAP8O43823 692 aaKnown RBP21.22■□□□□ 0.99
VPS53-211ENST00000571805 HLA-DPB1P04440 258 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 SLC35G6P0C7Q6 338 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 NDUFS1P28331 727 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 INSL4Q14641 139 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 EOGTQ5NDL2 527 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 SAMD14Q8IZD0 417 aaPredicted RBP21.22■□□□□ 0.99
VPS53-211ENST00000571805 SRMSQ9H3Y6 488 aa21.22■□□□□ 0.99
VPS53-211ENST00000571805 GABRPO00591 440 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 CHST10O43529 356 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 CTSVO60911 334 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 APEX1P27695 318 aaKnown RBP21.21■□□□□ 0.99
VPS53-211ENST00000571805 MADCAM1Q13477 382 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 MAPK14Q16539 360 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 DEFB134Q4QY38 66 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 TMEM196Q5HYL7 178 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 CCNJQ5T5M9 372 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 ZNF322Q6U7Q0 402 aaPredicted RBP21.21■□□□□ 0.99
VPS53-211ENST00000571805 USP53Q70EK8 1073 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 MARCH9Q86YJ5 346 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 GATAD2AQ86YP4 633 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 SIRT6Q8N6T7 355 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 ZCCHC10Q8TBK6 192 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 DNAJA4Q8WW22 397 aaPredicted RBP21.21■□□□□ 0.99
VPS53-211ENST00000571805 RPP25Q9BUL9 199 aaKnown RBP21.21■□□□□ 0.99
VPS53-211ENST00000571805 OR2B2Q9GZK3 357 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 ASB6Q9NWX5 421 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 PTGFRNQ9P2B2 879 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 ZNF223Q9UK11 482 aaPredicted RBP21.21■□□□□ 0.99
VPS53-211ENST00000571805 DAPP1Q9UN19 280 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms