RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SNRPD2P62316 118 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 RAP1AP62834 184 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TFF2Q03403 129 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SLC18A2Q05940 514 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 MERTKQ12866 999 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ELAVL2Q12926 359 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 MAD2L1Q13257 205 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 MAB21L1Q13394 359 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ALCAMQ13740 583 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SERTAD2Q14140 314 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 GK2Q14410 553 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 GPR176Q14439 515 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 KRT33BQ14525 404 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 PTGR1Q14914 329 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 DRAP1Q14919 205 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 OR8G1Q15617 311 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 NEDD8Q15843 81 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SNAPC1Q16533 368 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 CTF1Q16619 201 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 CYP1B1Q16678 543 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 LRRC26Q2I0M4 334 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ZNF630Q2M218 657 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 ASTE1Q2TB18 679 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 DEFB115Q30KQ5 88 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 PCGF3Q3KNV8 242 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 MOGAT2Q3SYC2 334 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SBK1Q52WX2 424 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 FASTKD1Q53R41 847 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 NHSL2Q5HYW2 709 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ANKRD22Q5VYY1 191 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 FBXW9Q5XUX1 488 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 XAF1Q6GPH4 301 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 MED27Q6P2C8 311 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 DENND1BQ6P3S1 775 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 KIRREL2Q6UWL6 708 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TMIGD1Q6UXZ0 262 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 WASH2PQ6VEQ5 465 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 HSDL2Q6YN16 418 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 FAM183BPQ6ZVS7 135 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 CYS1Q717R9 158 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ARMCX2Q7L311 632 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 CHST15Q7LFX5 561 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 MISPQ8IVT2 679 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 FAM71AQ8IYT1 594 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ZNF679Q8IYX0 411 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 GPR137CQ8N3F9 429 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 RASGEF1AQ8N9B8 481 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 BANPQ8N9N5 519 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 L3MBTL4Q8NA19 623 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ZNF383Q8NA42 475 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SLC44A5Q8NCS7 719 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 FAM83FQ8NEG4 500 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 OR7A2PQ8NGA2 310 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 OR2D3Q8NGH3 330 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 OR5D18Q8NGL1 313 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 OR4K15Q8NH41 348 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 FBXO25Q8TCJ0 367 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 C16orf78Q8WTQ4 265 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 CHURC1Q8WUH1 139 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SLC35F5Q8WV83 523 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TCTEX1D2Q8WW35 142 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 CORO2AQ92828 525 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 P2RX5Q93086 422 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TOP1MTQ969P6 601 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 OTULINQ96BN8 352 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ZNF707Q96C28 371 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 TM4SF18Q96CE8 201 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 CCDC124Q96CT7 223 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 PABPC5Q96DU9 382 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 RRNAD1Q96FB5 475 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 MED8Q96G25 268 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 PDLIM5Q96HC4 596 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 NLNQ9BYT8 704 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SEMA4CQ9C0C4 833 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 SLIRPQ9GZT3 109 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 MFFQ9GZY8 342 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 FAM83DQ9H4H8 585 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 KIR3DX1Q9H7L2 352 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 EVA1AQ9H8M9 152 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 HEXA-AS1Q9H8Q6 139 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 COPS7BQ9H9Q2 264 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 NMNAT1Q9HAN9 279 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 NRIP3Q9NQ35 241 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ZNF302Q9NR11 478 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TLR8Q9NR97 1041 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 KRT84Q9NSB2 600 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 IMP3Q9NV31 184 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 TBC1D13Q9NVG8 400 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 DUS2Q9NX74 493 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 CLEC5AQ9NY25 188 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 MED11Q9P086 117 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 DHCR7Q9UBM7 475 aaKnown RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 CACNG4Q9UBN1 327 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 OR12D3Q9UGF7 316 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 NAGKQ9UJ70 344 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ANAPC7Q9UJX3 599 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 KCND3Q9UK17 655 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 ADAM28Q9UKQ2 775 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 INTS6Q9UL03 887 aaKnown RBP3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms