RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SYT14Q8NB59 555 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 DUSP18Q8NEJ0 188 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 PRRG3Q9BZD7 231 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 PITHD1Q9GZP4 211 aaPredicted RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 SAP130Q9H0E3 1048 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 RPRD1BQ9NQG5 326 aaKnown RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 TEX10Q9NXF1 929 aaPredicted RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 TOR4AQ9NXH8 423 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 NCKAP1Q9Y2A7 1128 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 ZSCAN5BA6NJL1 495 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 CASKO14936 926 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 CASC3O15234 703 aaKnown RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 LIMS3P0CW19 117 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 LIMS4P0CW20 117 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 ERGP11308 486 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 DRD2P14416 443 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 PRKCAP17252 672 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 ALAS2P22557 587 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 APEX1P27695 318 aaKnown RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 HSD17B2P37059 387 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 MAN2A2P49641 1150 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 ANXA11P50995 505 aaKnown RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 TRA2BP62995 288 aaKnown RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 RPS21P63220 83 aaKnown RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 HOXC5Q00444 222 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 RPA4Q13156 261 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 TATDN3Q17R31 274 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 Q5BKY6 102 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 SNAP47Q5SQN1 464 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 TYW3Q6IPR3 259 aaKnown RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 SYT13Q7L8C5 426 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 KIF18BQ86Y91 864 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 TFGQ92734 400 aaPredicted RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 MARVELD3Q96A59 401 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 BEX2Q9BXY8 128 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 PLA2G12AQ9BZM1 189 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 PCBD2Q9H0N5 130 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 NT5DC2Q9H857 520 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 ZCCHC3Q9NUD5 404 aaKnown RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 ACOXLQ9NUZ1 547 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 MOSPD1Q9UJG1 213 aa12.39□□□□□ -0.43
VPS4A-204ENST00000566354 MRPS17Q9Y2R5 130 aaKnown RBP12.39□□□□□ -0.43
VPS4A-204ENST00000566354 DNAH14Q0VDD8 3507 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 SMIM30A4D0T7 59 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 OR6C70A6NIJ9 312 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 CHURC1-FNTBB4DL54 471 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 NDUFS4O43181 175 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 APOL3O95236 402 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 EPPINO95925 133 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 PRKAR1AP10644 381 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 EVX1P49640 407 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 KHKP50053 298 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 NUBP1P53384 320 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 LSM11P83369 360 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS4A-204ENST00000566354 LRRC32Q14392 662 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 IRF4Q15306 451 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 CNIH2Q6PI25 160 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 ZNF485Q8NCK3 441 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 OR10Z1Q8NGY1 313 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 GNPDA2Q8TDQ7 276 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 SHDQ96IW2 340 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 AMDHD1Q96NU7 426 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 CAMK1GQ96NX5 476 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 LGR4Q9BXB1 951 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 C1QTNF2Q9BXJ5 285 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 SLC17A9Q9BYT1 436 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 GLIPR2Q9H4G4 154 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 EGLN3Q9H6Z9 239 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 DDX31Q9H8H2 851 aaKnown RBP12.38□□□□□ -0.43
VPS4A-204ENST00000566354 TBC1D17Q9HA65 648 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 GIMAP4Q9NUV9 329 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 CUEDC1Q9NWM3 386 aaPredicted RBP12.38□□□□□ -0.43
VPS4A-204ENST00000566354 USP34Q70CQ2 3546 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 FEZF1A0PJY2 475 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 KDM4EB2RXH2 506 aaPredicted RBP12.38□□□□□ -0.43
VPS4A-204ENST00000566354 H7BY64 318 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 SLC31A1O15431 190 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 UBXN7O94888 489 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 PAHP00439 452 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 HLA-DPB1P04440 258 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 RPN2P04844 631 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 PRKAR1BP31321 381 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 BUD31P41223 144 aaPredicted RBP12.38□□□□□ -0.43
VPS4A-204ENST00000566354 REEP5Q00765 189 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 GALK2Q01415 458 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 FAPQ12884 760 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 SGCGQ13326 291 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 RIN1Q13671 783 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 KIAA1161Q6NSJ0 714 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 CORO6Q6QEF8 472 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 ZNF600Q6ZNG1 722 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 TP53I13Q8NBR0 393 aaPredicted RBP12.38□□□□□ -0.43
VPS4A-204ENST00000566354 SUN3Q8TAQ9 357 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 ZFAND1Q8TCF1 268 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 NR4A3Q92570 626 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 RFKQ969G6 155 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 PRAP1Q96NZ9 151 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 OR1A2Q9Y585 309 aa12.38□□□□□ -0.43
VPS4A-204ENST00000566354 A0A087WUU8 490 aa12.37□□□□□ -0.43
VPS4A-204ENST00000566354 A0A0G2JPF8 293 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms