RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ITGA2P17301 1181 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 IL12BP29460 328 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 KRT20P35900 424 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 EEF1A1P68104 462 aaKnown RBP28.19■■■□□ 2.1
CTCF-203ENST00000566078 PSPHP78330 225 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 EIPR1Q53HC9 387 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 C16orf47Q6ZP98 133 aaPredicted RBP28.19■■■□□ 2.1
CTCF-203ENST00000566078 LACC1Q8IV20 430 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 ZNF614Q8N883 585 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 OMA1Q96E52 524 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 ZNF300Q96RE9 604 aaPredicted RBP28.19■■■□□ 2.1
CTCF-203ENST00000566078 WFDC6Q9BQY6 131 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 DEFB126Q9BYW3 111 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 NTN4Q9HB63 628 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 KLHL28Q9NXS3 571 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 IL17BQ9UHF5 180 aa28.19■■■□□ 2.1
CTCF-203ENST00000566078 SAC3D1A6NKF1 404 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 REM1O75628 298 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 ABCD3P28288 659 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 NRG3P56975 720 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 GRAMD1BQ3KR37 738 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 OR2T5Q6IEZ7 315 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 RAB43Q86YS6 212 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 CLIP4Q8N3C7 705 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 OR2T29Q8NH02 315 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 EME1Q96AY2 570 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 NACC2Q96BF6 587 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 GPN2Q9H9Y4 310 aaPredicted RBP28.18■■■□□ 2.1
CTCF-203ENST00000566078 MMP25Q9NPA2 562 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 FBXL4Q9UKA2 621 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 ENPP4Q9Y6X5 453 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 TMEM200CA6NKL6 621 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 NPIPB9F8W1W9 429 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 WWP2O00308 870 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 PRSS23O95084 383 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 LIPCP11150 499 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 YAP1P46937 504 aaKnown RBP28.18■■■□□ 2.1
CTCF-203ENST00000566078 ATP12AP54707 1039 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 RTP5Q14D33 572 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 TGIF1Q15583 401 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 ZNF141Q15928 474 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 NRF1Q16656 503 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 RNF220Q5VTB9 566 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 MRGPREQ86SM8 312 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 RBM45Q8IUH3 476 aaKnown RBP28.18■■■□□ 2.1
CTCF-203ENST00000566078 KIAA1143Q96AT1 154 aaPredicted RBP28.18■■■□□ 2.1
CTCF-203ENST00000566078 ADOQ96SZ5 270 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 ARHGDIGQ99819 225 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 TACO1Q9BSH4 297 aaKnown RBP28.18■■■□□ 2.1
CTCF-203ENST00000566078 RLIMQ9NVW2 624 aa28.18■■■□□ 2.1
CTCF-203ENST00000566078 TSPAN2O60636 221 aa28.17■■■□□ 2.1
CTCF-203ENST00000566078 HPP00738 406 aa28.17■■■□□ 2.1
CTCF-203ENST00000566078 MRPL2Q5T653 305 aaKnown RBP28.17■■■□□ 2.1
CTCF-203ENST00000566078 DEF8Q6ZN54 512 aa28.17■■■□□ 2.1
CTCF-203ENST00000566078 CIB1Q99828 191 aa28.17■■■□□ 2.1
CTCF-203ENST00000566078 VCX3BQ9H321 246 aa28.17■■■□□ 2.1
CTCF-203ENST00000566078 P4HTMQ9NXG6 502 aa28.17■■■□□ 2.1
CTCF-203ENST00000566078 OAZ3Q9UMX2 235 aa28.17■■■□□ 2.1
CTCF-203ENST00000566078 J3KTA2 159 aa28.16■■■□□ 2.1
CTCF-203ENST00000566078 FRS3O43559 492 aa28.16■■■□□ 2.1
CTCF-203ENST00000566078 TAGAPQ8N103 731 aa28.16■■■□□ 2.1
CTCF-203ENST00000566078 ZNF347Q96SE7 839 aa28.16■■■□□ 2.1
CTCF-203ENST00000566078 KLHL4Q9C0H6 718 aa28.16■■■□□ 2.1
CTCF-203ENST00000566078 WDR70Q9NW82 654 aa28.16■■■□□ 2.1
CTCF-203ENST00000566078 VNN3Q9NY84 501 aa28.16■■■□□ 2.1
CTCF-203ENST00000566078 FLRT3Q9NZU0 649 aa28.16■■■□□ 2.1
CTCF-203ENST00000566078 FAM32AQ9Y421 112 aaKnown RBP28.16■■■□□ 2.1
CTCF-203ENST00000566078 UTS2O95399 124 aa28.15■■■□□ 2.1
CTCF-203ENST00000566078 ZNF23P17027 643 aa28.15■■■□□ 2.1
CTCF-203ENST00000566078 TCTN3Q6NUS6 607 aa28.15■■■□□ 2.1
CTCF-203ENST00000566078 EPHX4Q8IUS5 362 aa28.15■■■□□ 2.1
CTCF-203ENST00000566078 OR6T1Q8NGN1 323 aa28.15■■■□□ 2.1
CTCF-203ENST00000566078 OR4C3Q8NH37 302 aa28.15■■■□□ 2.1
CTCF-203ENST00000566078 HOXD1Q9GZZ0 328 aa28.15■■■□□ 2.1
CTCF-203ENST00000566078 MYOTQ9UBF9 498 aa28.15■■■□□ 2.1
CTCF-203ENST00000566078 TESMINQ9Y4I5 508 aa28.15■■■□□ 2.1
CTCF-203ENST00000566078 MASP2O00187 686 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 DNAJB5O75953 348 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 CYP4B1P13584 511 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 LCN1P31025 176 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 IST1P53990 364 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 FOXC1Q12948 553 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 PPP1R8Q12972 351 aaKnown RBP28.14■■■□□ 2.1
CTCF-203ENST00000566078 CATSPER1Q8NEC5 780 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 DOCK10Q96BY6 2186 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 NXPE2Q96DL1 559 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 ARMC7Q9H6L4 198 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 UBQLN4Q9NRR5 601 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 ST6GALNAC1Q9NSC7 600 aaPredicted RBP28.14■■■□□ 2.1
CTCF-203ENST00000566078 DTNAQ9Y4J8 743 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 NPFFR2Q9Y5X5 522 aa28.14■■■□□ 2.1
CTCF-203ENST00000566078 CDHR4A6H8M9 788 aa28.14■■■□□ 2.09
CTCF-203ENST00000566078 ABCB7O75027 752 aa28.14■■■□□ 2.09
CTCF-203ENST00000566078 E2F6O75461 281 aa28.14■■■□□ 2.09
CTCF-203ENST00000566078 NADKO95544 446 aaPredicted RBP28.14■■■□□ 2.09
CTCF-203ENST00000566078 CAPNS1P04632 268 aa28.14■■■□□ 2.09
CTCF-203ENST00000566078 RHCEP18577 417 aa28.14■■■□□ 2.09
CTCF-203ENST00000566078 RRM2P31350 389 aa28.14■■■□□ 2.09
CTCF-203ENST00000566078 PNLIPRP2P54317 469 aa28.14■■■□□ 2.09
CTCF-203ENST00000566078 RGS8P57771 180 aaPredicted RBP28.14■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms