RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RMND5BQ96G75 393 aaPredicted RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 MS4A4EQ96PG1 132 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 TM9SF2Q99805 663 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 KLHDC3Q9BQ90 382 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 C3orf14Q9HBI5 128 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 RASSF1Q9NS23 344 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 GIN1Q9NXP7 522 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 HAO1Q9UJM8 370 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 DKKL1Q9UK85 242 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 MRTO4Q9UKD2 239 aaKnown RBP13.43□□□□□ -0.26
CLN3-213ENST00000565047 SPG11Q96JI7 2443 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 VPS13CQ709C8 3753 aa13.43□□□□□ -0.26
CLN3-213ENST00000565047 ANKHD1Q8IWZ3 2542 aaKnown RBP13.42□□□□□ -0.26
CLN3-213ENST00000565047 OR2M5A3KFT3 312 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 TMEM114B3SHH9 223 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 CTIFO43310 598 aaKnown RBP13.42□□□□□ -0.26
CLN3-213ENST00000565047 LYPLA1O75608 230 aaPredicted RBP13.42□□□□□ -0.26
CLN3-213ENST00000565047 KCNH1O95259 989 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 OXSR1O95747 527 aaPredicted RBP13.42□□□□□ -0.26
CLN3-213ENST00000565047 PEPDP12955 493 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 HK1P19367 917 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 TBXA2RP21731 343 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 C17orf67Q0P5P2 114 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 MYBPHQ13203 477 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 VPS26BQ4G0F5 336 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 ATP6AP1LQ52LC2 224 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 IL23RQ5VWK5 629 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 SPNS3Q6ZMD2 512 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 CAMKMTQ7Z624 323 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 ZZZ3Q8IYH5 903 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 KRTCAP2Q8N6L1 136 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 OR5M1Q8NGP8 315 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 FAM222BQ8WU58 562 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 OR5P2Q8WZ92 322 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 INTS12Q96CB8 462 aaKnown RBP13.42□□□□□ -0.26
CLN3-213ENST00000565047 PKNOX2Q96KN3 472 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 SORT1Q99523 831 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 NPAS1Q99742 590 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 C1orf50Q9BV19 199 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 SFXN3Q9BWM7 321 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 CXorf36Q9H7Y0 433 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 GPATCH2Q9NW75 528 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 ASIC5Q9NY37 505 aa13.42□□□□□ -0.26
CLN3-213ENST00000565047 TEP1Q99973 2627 aaKnown RBP13.42□□□□□ -0.26
CLN3-213ENST00000565047 ANKRD17O75179 2603 aaKnown RBP13.41□□□□□ -0.26
CLN3-213ENST00000565047 A0A1W2PRB8 838 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 A8MXE2 369 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 LINC01387J3KSC0 135 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 BIRC5O15392 142 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 SKAP2O75563 359 aaPredicted RBP13.41□□□□□ -0.26
CLN3-213ENST00000565047 SERPINE1P05121 402 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 HMGN2P05204 90 aaKnown RBP13.41□□□□□ -0.26
CLN3-213ENST00000565047 G6PDP11413 515 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 TCEA1P23193 301 aaKnown RBP13.41□□□□□ -0.26
CLN3-213ENST00000565047 PSMA4P25789 261 aaKnown RBP13.41□□□□□ -0.26
CLN3-213ENST00000565047 MAPK1P28482 360 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 LCN1P31025 176 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 DNAJA1P31689 397 aaKnown RBP13.41□□□□□ -0.26
CLN3-213ENST00000565047 DGKQP52824 942 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 CLDN20P56880 219 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 SORDQ00796 357 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 OCRLQ01968 901 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 EMX2Q04743 252 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 STX5Q13190 355 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 GUSBP1Q15486 140 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 KRT71Q3SY84 523 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 FLYWCH1Q4VC44 716 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 FIGNL1Q6PIW4 674 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 GALNT10Q86SR1 603 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 GGNQ86UU5 652 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 MED12LQ86YW9 2145 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 NUDCD3Q8IVD9 361 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 ZNF781Q8N8C0 355 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 GOT1L1Q8NHS2 421 aaPredicted RBP13.41□□□□□ -0.26
CLN3-213ENST00000565047 FBXO30Q8TB52 745 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 SLC9A6Q92581 669 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 DTNBP1Q96EV8 351 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 ZIM3Q96PE6 472 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 STACQ99469 402 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 YIPF4Q9BSR8 244 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 PIGUQ9H490 435 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 DUSP22Q9NRW4 184 aa13.41□□□□□ -0.26
CLN3-213ENST00000565047 A0A1W2PNV4 684 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 A6NNC1 897 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 TNFRSF21O75509 655 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 ZWINTO95229 277 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 PRPS1L1P21108 318 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 HPCAL1P37235 193 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 RPL3P39023 403 aaKnown RBP13.4□□□□□ -0.26
CLN3-213ENST00000565047 RFX3P48380 749 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 CLDN8P56748 225 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 LASP1Q14847 261 aaKnown RBP13.4□□□□□ -0.26
CLN3-213ENST00000565047 CHI3L2Q15782 390 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 SMU1Q2TAY7 513 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 CCNJQ5T5M9 372 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 CPTPQ5TA50 214 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 GCNT2Q8N0V5 402 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 NATD1Q8N6N6 113 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 FNDC5Q8NAU1 212 aa13.4□□□□□ -0.26
CLN3-213ENST00000565047 FIG4Q92562 907 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms