RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 TRAP1Q12931 704 aaKnown RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 NPRL3Q12980 569 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 MSLNQ13421 630 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 MED21Q13503 144 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 TMEM132DQ14C87 1099 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 ALX1Q15699 326 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 FAM189A2Q15884 450 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 SHROOM1Q2M3G4 852 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 KCTD21Q4G0X4 260 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 EIPR1Q53HC9 387 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 LRRC73Q5JTD7 316 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.29□□□□□ -1.88
CHD9-212ENST00000564641 RSBN1Q5VWQ0 802 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 OR4A47Q6IF82 309 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 CASC4Q6P4E1 433 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 WDR59Q6PJI9 974 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 TMEM270Q6UE05 265 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 NLRP9Q7RTR0 991 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 MIER3Q7Z3K6 550 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 VPS36Q86VN1 386 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 RNF130Q86XS8 419 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 FAM219AQ8IW50 185 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 NELFCDQ8IXH7 590 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 RYBPQ8N488 228 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 Q8N7P7 452 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 UXS1Q8NBZ7 420 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 CCDC110Q8TBZ0 833 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 FNDC8Q8TC99 324 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 DDI1Q8WTU0 396 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 CKAP2Q8WWK9 683 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 RIT1Q92963 219 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 EFHD2Q96C19 240 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 PGM2Q96G03 612 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 PAGE5Q96GU1 130 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 EPSTI1Q96J88 318 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 GSDMAQ96QA5 445 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 TGS1Q96RS0 853 aaKnown RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 ZNF184Q99676 751 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 ECSITQ9BQ95 431 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 TBC1D10AQ9BXI6 508 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 ROPN1BQ9BZX4 212 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 GBA3Q9H227 469 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 DPH5Q9H2P9 285 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 TPK1Q9H3S4 243 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 MINDY3Q9H8M7 445 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 ROPN1Q9HAT0 212 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 PARVGQ9HBI0 331 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 PRMT8Q9NR22 394 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 SAR1AQ9NR31 198 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 DDX18Q9NVP1 670 aaKnown RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 C6orf203Q9P0P8 240 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 THAP10Q9P2Z0 257 aaPredicted RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 TRPC4Q9UBN4 977 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 PRO0461Q9UI25 63 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 TRAF3IP3Q9Y228 551 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 TDRKHQ9Y2W6 561 aaKnown RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 UTP11Q9Y3A2 253 aaKnown RBP3.29□□□□□ -1.88
CHD9-212ENST00000564641 TIMM22Q9Y584 194 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 PCDHGA1Q9Y5H4 931 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 NOTCH2Q04721 2471 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 MUC6Q6W4X9 2439 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 SCN10AQ9Y5Y9 1956 aa3.29□□□□□ -1.88
CHD9-212ENST00000564641 BRWD1Q9NSI6 2320 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 TRANK1O15050 2925 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 UMODL1Q5DID0 1318 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 KLF18A0A0U1RQI7 1052 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 SH3PXD2BA1X283 911 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 ZSCAN5CA6NGD5 496 aaPredicted RBP3.28□□□□□ -1.88
CHD9-212ENST00000564641 A8MXQ7 604 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 SHISA9B4DS77 424 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 C2CD4DB7Z1M9 353 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 E7EWF7 191 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 NPIPB9F8W1W9 429 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 FBP2O00757 339 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 FPGTO14772 594 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 FLRT2O43155 660 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 BUB1O43683 1085 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 ENTPD5O75356 428 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 MTRF1O75570 445 aaKnown RBP3.28□□□□□ -1.88
CHD9-212ENST00000564641 PRDM1O75626 825 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 PALMO75781 387 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 GJB5O95377 273 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 KRT75O95678 551 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 FGFR1OPO95684 399 aaKnown RBP3.28□□□□□ -1.88
CHD9-212ENST00000564641 CA3P07451 260 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 IQCF3P0C7M6 154 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 OCM2P0CE71 109 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 OCMP0CE72 109 aaPredicted RBP3.28□□□□□ -1.88
CHD9-212ENST00000564641 C8orf89P0DMQ9 161 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 VCLP18206 1134 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 PRKACBP22694 351 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 AADACP22760 399 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 CETN2P41208 172 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 MTIF2P46199 727 aaKnown RBP3.28□□□□□ -1.88
CHD9-212ENST00000564641 RPL5P46777 297 aaKnown RBP3.28□□□□□ -1.88
CHD9-212ENST00000564641 TUFMP49411 452 aaKnown RBP3.28□□□□□ -1.88
CHD9-212ENST00000564641 EIF2B2P49770 351 aaKnown RBP3.28□□□□□ -1.88
CHD9-212ENST00000564641 MAPK12P53778 367 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 NUP107P57740 925 aa3.28□□□□□ -1.88
CHD9-212ENST00000564641 RPS6P62753 249 aaKnown RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms