RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 GPR22Q99680 433 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 MCMBPQ9BTE3 642 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 FAIM2Q9BWQ8 316 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 POTEKPQ9BYX7 375 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 EML4Q9HC35 981 aaKnown RBP6.51□□□□□ -1.37
VPS4A-203ENST00000564399 SAYSD1Q9NPB0 183 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 CBLN4Q9NTU7 201 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 SENP1Q9P0U3 644 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 POU2F3Q9UKI9 436 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 UTS2RQ9UKP6 389 aa6.51□□□□□ -1.37
VPS4A-203ENST00000564399 CXorf49A8MYA2 514 aaPredicted RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 GOLGA6L6A8MZA4 724 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 TNFSF11O14788 317 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 SIX3O95343 332 aaPredicted RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 CLDN9O95484 217 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 TGFAP01135 160 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 CSF3P09919 207 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 LTA4HP09960 611 aaKnown RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 PABPC4LP0CB38 370 aaKnown RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 MTHFD2P13995 350 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ITGA2P17301 1181 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ME2P23368 584 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 IVDP26440 423 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 TTKP33981 857 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 GP5P40197 560 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 C17orf67Q0P5P2 114 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ZNF155Q12901 538 aaPredicted RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 DLG1Q12959 904 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 IFT88Q13099 833 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ITGADQ13349 1161 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ACAP2Q15057 778 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 P2RY6Q15077 328 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 PPA1Q15181 289 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ZKSCAN8Q15776 578 aaPredicted RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 DECR1Q16698 335 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ZNF628Q5EBL2 1059 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 FRG2Q64ET8 278 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 HBMQ6B0K9 141 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 TFAP2EQ6VUC0 442 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 NUFIP2Q7Z417 695 aaKnown RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 COMMD6Q7Z4G1 85 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 GOLGA7Q7Z5G4 137 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 CMC1Q7Z7K0 106 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 MEX3DQ86XN8 651 aaKnown RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ZBED8Q8IZ13 594 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 METTL4Q8N3J2 472 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 OR9A2Q8NGT5 310 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 OR2V1Q8NHB1 315 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ZNF675Q8TD23 568 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 SLC9A6Q92581 669 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 OSTF1Q92882 214 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 TM4SF18Q96CE8 201 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 NXNL1Q96CM4 212 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 MSI2Q96DH6 328 aaKnown RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ERP27Q96DN0 273 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 MTBPQ96DY7 904 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ZNF681Q96N22 645 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 CDK15Q96Q40 435 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 FRG2BQ96QU4 278 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 RBBP8Q99708 897 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 CPNE1Q99829 537 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 USB1Q9BQ65 265 aaKnown RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 TBL1XR1Q9BZK7 514 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 RTN4RQ9BZR6 473 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ADAM19Q9H013 955 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 TMEM185BQ9H7F4 350 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 NOL11Q9H8H0 719 aaKnown RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 GIMAP4Q9NUV9 329 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 FAM120CQ9NX05 1096 aaKnown RBP6.5□□□□□ -1.37
VPS4A-203ENST00000564399 TAS2R9Q9NYW1 312 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 FLRT3Q9NZU0 649 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ABCG2Q9UNQ0 655 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 SLC12A4Q9UP95 1085 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 ACOT9Q9Y305 439 aa6.5□□□□□ -1.37
VPS4A-203ENST00000564399 A0A0J9YW62 118 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 ESYT3A0FGR9 886 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 ADAMDEC1O15204 470 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 LYZL6O75951 148 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 ANGPTL1O95841 491 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 COL6A2P12110 1019 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 APEHP13798 732 aaKnown RBP6.49□□□□□ -1.37
VPS4A-203ENST00000564399 ZNF17P17021 662 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 EGR1P18146 543 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 SSTR1P30872 391 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 SPRP35270 261 aaPredicted RBP6.49□□□□□ -1.37
VPS4A-203ENST00000564399 SRP14P37108 136 aaKnown RBP6.49□□□□□ -1.37
VPS4A-203ENST00000564399 FABP6P51161 128 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 CCNG1P51959 295 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 EFNA4P52798 201 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 ALDH18A1P54886 795 aaKnown RBP6.49□□□□□ -1.37
VPS4A-203ENST00000564399 CARD18P57730 90 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 RAC1P63000 192 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 CARTPTQ16568 116 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 CR1LQ2VPA4 569 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 CYP27C1Q4G0S4 372 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 C11orf71Q6IPW1 123 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 SLC22A25Q6T423 547 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 SEZ6L2Q6UXD5 910 aa6.49□□□□□ -1.37
VPS4A-203ENST00000564399 ZNF662Q6ZS27 426 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms