RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ATP12AP54707 1039 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 ALDH6A1Q02252 535 aaKnown RBP9.23□□□□□ -0.93
USP3-216ENST00000559873 GPR68Q15743 365 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 GRAMD1BQ3KR37 738 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 INTS11Q5TA45 600 aaKnown RBP9.23□□□□□ -0.93
USP3-216ENST00000559873 NANOGP8Q6NSW7 305 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 ERICH5Q6P6B1 374 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 C16orf89Q6UX73 402 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 TRPM8Q7Z2W7 1104 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.23□□□□□ -0.93
USP3-216ENST00000559873 GALNT10Q86SR1 603 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 KRT73Q86Y46 540 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 PEX5LQ8IYB4 626 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 FITM2Q8N6M3 262 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 ZNF614Q8N883 585 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 Q8NA96 180 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 ZFP62Q8NB50 900 aaPredicted RBP9.23□□□□□ -0.93
USP3-216ENST00000559873 C11orf65Q8NCR3 313 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 OR2M7Q8NG81 312 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 BBS10Q8TAM1 723 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 GRHL3Q8TE85 626 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 JSRP1Q96MG2 331 aaPredicted RBP9.23□□□□□ -0.93
USP3-216ENST00000559873 BBC3Q96PG8 261 aaPredicted RBP9.23□□□□□ -0.93
USP3-216ENST00000559873 SPATA5L1Q9BVQ7 753 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 TMEM38AQ9H6F2 299 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 PTGES2Q9H7Z7 377 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 NANOGQ9H9S0 305 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 ZFP64Q9NPA5 681 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 SPAG4Q9NPE6 437 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 OLAHQ9NV23 265 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 KCNE3Q9Y6H6 103 aa9.23□□□□□ -0.93
USP3-216ENST00000559873 ATMQ13315 3056 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 A0A0G2JPF8 293 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 HNRNPCL2B2RXH8 293 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 HNRNPCL3B7ZW38 293 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 B8ZZF3 427 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 FAM47E-STBD1D6RA91 191 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 FADS1O60427 444 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 HNRNPCL1O60812 293 aaKnown RBP9.22□□□□□ -0.93
USP3-216ENST00000559873 TNFRSF21O75509 655 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 PDE9AO76083 593 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 OXSR1O95747 527 aaPredicted RBP9.22□□□□□ -0.93
USP3-216ENST00000559873 ANGPTL1O95841 491 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 IGKV1D-16P01601 117 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 DBIP07108 87 aaKnown RBP9.22□□□□□ -0.93
USP3-216ENST00000559873 TFPTP0C1Z6 253 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 HNRNPCL4P0DMR1 293 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 ARAFP10398 606 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 SLC6A2P23975 617 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 MSX1P28360 303 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 CDK6Q00534 326 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 C17orf67Q0P5P2 114 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 SCARB2Q14108 478 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 INPP5JQ15735 1006 aaPredicted RBP9.22□□□□□ -0.93
USP3-216ENST00000559873 ZSWIM7Q19AV6 140 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 HYAL4Q2M3T9 481 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 LIN52Q52LA3 116 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 SOWAHCQ53LP3 525 aaPredicted RBP9.22□□□□□ -0.93
USP3-216ENST00000559873 TIGD3Q6B0B8 471 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 TYW3Q6IPR3 259 aaKnown RBP9.22□□□□□ -0.93
USP3-216ENST00000559873 REEP3Q6NUK4 255 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 BNC2Q6ZN30 1099 aaPredicted RBP9.22□□□□□ -0.93
USP3-216ENST00000559873 FRRS1Q6ZNA5 592 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 FAM109AQ8N4B1 249 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 ANKFN1Q8N957 763 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 HIPK4Q8NE63 616 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 TNIP2Q8NFZ5 429 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 OR4K17Q8NGC6 315 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 OR1J4Q8NGS1 313 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 CPT1CQ8TCG5 803 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 SLC38A5Q8WUX1 472 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 RNF138Q8WVD3 245 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 TMEM19Q96HH6 336 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 SLC39A3Q9BRY0 314 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 TTTY12Q9BZ98 90 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 SAP130Q9H0E3 1048 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 IKZF5Q9H5V7 419 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 ARMC7Q9H6L4 198 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 KAT8Q9H7Z6 458 aaKnown RBP9.22□□□□□ -0.93
USP3-216ENST00000559873 BCL2L10Q9HD36 194 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 DEPPQ9NTK1 212 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 QPCTLQ9NXS2 382 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 TUBA8Q9NY65 449 aaPredicted RBP9.22□□□□□ -0.93
USP3-216ENST00000559873 SUCOQ9UBS9 1254 aaKnown RBP9.22□□□□□ -0.93
USP3-216ENST00000559873 MKLN1Q9UL63 735 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 SLC35A3Q9Y2D2 325 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 DTNAQ9Y4J8 743 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 BSNQ9UPA5 3926 aa9.22□□□□□ -0.93
USP3-216ENST00000559873 A0A0G2JMM0 328 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 A0A1W2PPB8 328 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 A0A1W2PRS3 328 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 KIR3DP1A8MWS1 328 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 FAM220BPB1ANY3 271 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 NPIPB9F8W1W9 429 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 GNB5O14775 395 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 TRIM3O75382 744 aaPredicted RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 SERPINB7O75635 380 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 CBR3O75828 277 aa9.21□□□□□ -0.94
USP3-216ENST00000559873 GLSO94925 669 aaPredicted RBP9.21□□□□□ -0.94
USP3-216ENST00000559873 CHRM4P08173 479 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms