RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 DSCR4P56555 118 aaPredicted RBP11.33□□□□□ -0.6
SMAD3-208ENST00000558827 NME5P56597 212 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 CLDN18P56856 261 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 TP53BP2Q13625 1128 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 HHATQ5VTY9 493 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 PPP4R4Q6NUP7 873 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 MFSD12Q6NUT3 480 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 RNF165Q6ZSG1 346 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 OLIG3Q7RTU3 272 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 LUZP2Q86TE4 346 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 COX18Q8N8Q8 333 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 FADS6Q8N9I5 356 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 CDRT4Q8N9R6 151 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 RNF138Q8WVD3 245 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 CDS1Q92903 461 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 NPAS1Q99742 590 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 TREX2Q9BQ50 279 aaPredicted RBP11.33□□□□□ -0.6
SMAD3-208ENST00000558827 AKTIPQ9H8T0 292 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 MCCC2Q9HCC0 563 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 SDHAF3Q9NRP4 125 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 ACSS1Q9NUB1 689 aaPredicted RBP11.33□□□□□ -0.6
SMAD3-208ENST00000558827 FAM120CQ9NX05 1096 aaKnown RBP11.33□□□□□ -0.6
SMAD3-208ENST00000558827 MRTO4Q9UKD2 239 aaKnown RBP11.33□□□□□ -0.6
SMAD3-208ENST00000558827 EIF3LQ9Y262 564 aaKnown RBP11.33□□□□□ -0.6
SMAD3-208ENST00000558827 VDAC3Q9Y277 283 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 ZNF337Q9Y3M9 751 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 L3MBTL1Q9Y468 752 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 PCDHGB3Q9Y5G1 929 aa11.33□□□□□ -0.6
SMAD3-208ENST00000558827 OR2M5A3KFT3 312 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 CD8B2A6NJW9 211 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 ENO4A6NNW6 628 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 C9JVG2 144 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 FAM47E-STBD1D6RA91 191 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 ZWINTO95229 277 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 OXSR1O95747 527 aaPredicted RBP11.32□□□□□ -0.6
SMAD3-208ENST00000558827 HMGN2P05204 90 aaKnown RBP11.32□□□□□ -0.6
SMAD3-208ENST00000558827 CPN1P15169 458 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 POU3F2P20265 443 aaPredicted RBP11.32□□□□□ -0.6
SMAD3-208ENST00000558827 CTSSP25774 331 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 SERPINB5P36952 375 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 MAP3K8P41279 467 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 KIR2DL3P43628 341 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 CCT3P49368 545 aaKnown RBP11.32□□□□□ -0.6
SMAD3-208ENST00000558827 SUCLG1P53597 346 aaKnown RBP11.32□□□□□ -0.6
SMAD3-208ENST00000558827 DIO3P55073 304 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 CLDN15P56746 228 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 CLDN20P56880 219 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 RPS26P62854 115 aaKnown RBP11.32□□□□□ -0.6
SMAD3-208ENST00000558827 STX3Q13277 289 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 OR4F3Q6IEY1 312 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 AAGABQ6PD74 315 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 LRIG3Q6UXM1 1119 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 CHMP1BQ7LBR1 199 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 P4HA3Q7Z4N8 544 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 GRAMD2AQ8IUY3 354 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 CLECL1Q8IZS7 167 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 LINC01560Q8TB33 94 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 ZPLD1Q8TCW7 415 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 OR5P2Q8WZ92 322 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 MTERF3Q96E29 417 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 C14orf79Q96F83 325 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 MS4A4EQ96PG1 132 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 SORT1Q99523 831 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 DUSP26Q9BV47 211 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 NUF2Q9BZD4 464 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 CALHM2Q9HA72 323 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 CRIM1Q9NZV1 1036 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 ANKHD1Q8IWZ3 2542 aaKnown RBP11.32□□□□□ -0.6
SMAD3-208ENST00000558827 ABCA4P78363 2273 aa11.32□□□□□ -0.6
SMAD3-208ENST00000558827 MBD3L4A6NDZ8 208 aaPredicted RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 MBD3L3A6NE82 208 aaPredicted RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 MBD3L5A6NJ08 208 aaPredicted RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 SYT5O00445 386 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 OIP5O43482 229 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 NDUFB5O43674 189 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 CPSF4O95639 269 aaKnown RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 DHRS4L1P0CG22 281 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 KITP10721 976 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 ZNF708P17019 499 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 PRIM2P49643 509 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 ASCL1P50553 236 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 RPL14P50914 215 aaKnown RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 PSMD4P55036 377 aaKnown RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 WDR4P57081 412 aaKnown RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 SIRPAP78324 504 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 POU6F2P78424 691 aaPredicted RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 BST1Q10588 318 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 SF3B4Q15427 424 aaKnown RBP eCLIP11.31□□□□□ -0.66e-6■□□□□ 11
SMAD3-208ENST00000558827 NDUFAF6Q330K2 333 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 VPS26BQ4G0F5 336 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 ANKRD46Q86W74 232 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 LSRQ86X29 649 aaPredicted RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 OR5D16Q8NGK9 328 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 MBD3L2Q8NHZ7 208 aaPredicted RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 FIG4Q92562 907 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 RNASE6Q93091 150 aaKnown RBP11.31□□□□□ -0.6
SMAD3-208ENST00000558827 COQ8BQ96D53 544 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 ARSGQ96EG1 525 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 C1GALT1C1Q96EU7 318 aa11.31□□□□□ -0.6
SMAD3-208ENST00000558827 ZNF764Q96H86 408 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms