RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-205	ENST00000556096	RPLP0	P05388	317 aa	Known RBP	13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	CHM	P24386	653 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	ALDH6A1	Q02252	535 aa	Known RBP	13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	FOXD4	Q12950	439 aa	Predicted RBP	13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	PTGES3	Q15185	160 aa	Known RBP	13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	CLPP	Q16740	277 aa	Predicted RBP	13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	ENTPD8	Q5MY95	495 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	C1orf94	Q6P1W5	598 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096		Q6ZPB1	254 aa	Predicted RBP	13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	GPR141	Q7Z602	305 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	OR4K5	Q8NGD3	323 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	RHOXF1	Q8NHV9	184 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	TMIGD2	Q96BF3	282 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	MCHR1	Q99705	422 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	CNPPD1	Q9BV87	410 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	YIPF2	Q9BWQ6	316 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	DUSP21	Q9H596	190 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	POLR1B	Q9H9Y6	1135 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	VCX3A	Q9NNX9	186 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	PRODH2	Q9UF12	536 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	KCNE5	Q9UJ90	142 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	ERVK-19	Q9WJR5	959 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	CEPT1	Q9Y6K0	416 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	CENPVL1	A0A0U1RR11	272 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	CDHR4	A6H8M9	788 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	LRP3	O75074	770 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	WBP4	O75554	376 aa	Known RBP	13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	TNNI3	P19429	210 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	FMO3	P31513	532 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	IFNGR2	P38484	337 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	ZNF136	P52737	540 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	TARDBP	Q13148	414 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	PRAMEF17	Q5VTA0	474 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	ZER1	Q7Z7L7	766 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	SPART	Q8N0X7	666 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	C16orf52	Q8NHV5	167 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	FAM81A	Q8TBF8	368 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	PTPMT1	Q8WUK0	201 aa	Predicted RBP	13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	APH1B	Q8WW43	257 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	UBE2F	Q969M7	185 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	YIPF3	Q9GZM5	350 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096		Q9N2J8	555 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	TMEM9B	Q9NQ34	198 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	RASSF1	Q9NS23	344 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	PLCXD1	Q9NUJ7	323 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	PCDHGB1	Q9Y5G3	927 aa		13.64	□□□□□ -0.23
VPS33B-205	ENST00000556096	ADAMTS20	P59510	1910 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	UNC13C	Q8NB66	2214 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096		A0A087WUU8	490 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	IGHV5-10-1	A0A0J9YXX1	117 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	SYNDIG1L	A6NDD5	238 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	CLDN24	A6NM45	220 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	CPSF4L	A6NMK7	179 aa	Known RBP	13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	C17orf105	B2RV13	164 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096		H3BSA7	217 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	PEX12	O00623	359 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	XPNPEP2	O43895	674 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	FMO6P	O60774	539 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	CLPS	P04118	112 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	HTR1A	P08908	422 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	CKMT1A	P12532	417 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	GABRB1	P18505	474 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	GSTM3	P21266	225 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	MMP11	P24347	488 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	PGD	P52209	483 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	CDC42	P60953	191 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	SLC35A2	P78381	396 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	RHAG	Q02094	409 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	DECR1	Q16698	335 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	ZSWIM7	Q19AV6	140 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	FLYWCH1	Q4VC44	716 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	MRPL2	Q5T653	305 aa	Known RBP	13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	RHBDD2	Q6NTF9	364 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	NPSR1	Q6W5P4	371 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	PLEKHM3	Q6ZWE6	761 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	RANBP3L	Q86VV4	465 aa	Predicted RBP	13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	TMEM151B	Q8IW70	566 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	IPCEF1	Q8WWN9	437 aa	Predicted RBP	13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	NODAL	Q96S42	347 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	G6PC3	Q9BUM1	346 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	PRR14	Q9BWN1	585 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	CCNB1IP1	Q9NPC3	277 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	MKKS	Q9NPJ1	570 aa	Predicted RBP	13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	CTPS2	Q9NRF8	586 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	DTX4	Q9Y2E6	619 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	PCDHGA10	Q9Y5H3	936 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	SNX5	Q9Y5X3	404 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	FAM186A	A6NE01	2351 aa		13.63	□□□□□ -0.23
VPS33B-205	ENST00000556096	GVINP1	Q7Z2Y8	2422 aa		13.62	□□□□□ -0.23
VPS33B-205	ENST00000556096	PTGES3L	E9PB15	166 aa		13.62	□□□□□ -0.23
VPS33B-205	ENST00000556096	DYRK3	O43781	588 aa		13.62	□□□□□ -0.23
VPS33B-205	ENST00000556096	MPZL2	O60487	215 aa		13.62	□□□□□ -0.23
VPS33B-205	ENST00000556096	CT45A8	P0DMV1	189 aa		13.62	□□□□□ -0.23
VPS33B-205	ENST00000556096	CT45A9	P0DMV2	189 aa		13.62	□□□□□ -0.23
VPS33B-205	ENST00000556096	DRD5	P21918	477 aa		13.62	□□□□□ -0.23
VPS33B-205	ENST00000556096	DUSP3	P51452	185 aa	Predicted RBP	13.62	□□□□□ -0.23
VPS33B-205	ENST00000556096	PMS2P3	Q13401	168 aa		13.62	□□□□□ -0.23
VPS33B-205	ENST00000556096	CT45A2	Q5DJT8	189 aa		13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms