RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CXXC5Q7LFL8 322 aaKnown RBP16.4■□□□□ 0.22
SYNE3-202ENST00000553340 GPR135Q8IZ08 494 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 KREMEN2Q8NCW0 462 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 OR11H7Q8NGC8 314 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 OR7D2Q96RA2 312 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 ALG8Q9BVK2 526 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 PTTG3PQ9NZH4 202 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 CALML5Q9NZT1 146 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 LRIT2A6NDA9 550 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 FAM183AA6NL82 134 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 HRO43593 1189 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 SHC1P29353 583 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 RGS8P57771 180 aaPredicted RBP16.4■□□□□ 0.22
SYNE3-202ENST00000553340 CSNK1G2P78368 415 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 C9orf64Q5T6V5 341 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 LUZP2Q86TE4 346 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 GID4Q8IVV7 300 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 SLC38A6Q8IZM9 456 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 ZNF655Q8N720 491 aaPredicted RBP16.4■□□□□ 0.22
SYNE3-202ENST00000553340 ZNF680Q8NEM1 530 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 NLGN3Q9NZ94 848 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 GLTPQ9NZD2 209 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 KCNN3Q9UGI6 736 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 RASD1Q9Y272 281 aa16.4■□□□□ 0.22
SYNE3-202ENST00000553340 SIRT4Q9Y6E7 314 aaPredicted RBP16.4■□□□□ 0.22
SYNE3-202ENST00000553340 PDE4DIPQ5VU43 2346 aa16.39■□□□□ 0.22
SYNE3-202ENST00000553340 A0A1W2PPV9 198 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 KLF4O43474 513 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 THBS2P35442 1172 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 GCGRP47871 477 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 SHC2P98077 582 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 ZNF750Q32MQ0 723 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 PYHIN1Q6K0P9 492 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 LILRA6Q6PI73 481 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 MBOAT2Q6ZWT7 520 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 OR8H3Q8N146 312 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 PXYLP1Q8TE99 480 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 SAMD8Q96LT4 415 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 TRIM36Q9NQ86 728 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 EIF3KQ9UBQ5 218 aaKnown RBP16.39■□□□□ 0.21
SYNE3-202ENST00000553340 SLC23A2Q9UGH3 650 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 ENTPD4Q9Y227 616 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 NUBP2Q9Y5Y2 271 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 MYO10Q9HD67 2058 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 A0A1B0GVC2 190 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 A6NIN4 97 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 PGRMC2O15173 223 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 TMEM35AQ53FP2 167 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 CD276Q5ZPR3 534 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 SFXN4Q6P4A7 337 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 ARRDC3Q96B67 414 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 NACC2Q96BF6 587 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 CLIP3Q96DZ5 547 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 CNRIP1Q96F85 164 aaPredicted RBP16.39■□□□□ 0.21
SYNE3-202ENST00000553340 ABHD1Q96SE0 405 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 MCHR1Q99705 422 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 MENTQ9BUN1 341 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 OR51J1Q9H342 316 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 EQTNQ9NQ60 294 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 CHST2Q9Y4C5 530 aa16.39■□□□□ 0.21
SYNE3-202ENST00000553340 TCF20Q9UGU0 1960 aaKnown RBP16.39■□□□□ 0.21
SYNE3-202ENST00000553340 TEX51A0A1B0GUA7 166 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 RAF1P04049 648 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 TPOP07202 933 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 AHRP35869 848 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 VASPP50552 380 aaPredicted RBP16.38■□□□□ 0.21
SYNE3-202ENST00000553340 PLBD1Q6P4A8 553 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 GDF7Q7Z4P5 450 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 SLC41A3Q96GZ6 507 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 OR2M2Q96R28 347 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 NARFLQ9H6Q4 476 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 NTNG1Q9Y2I2 539 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 SPEF1Q9Y4P9 236 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 IRAK3Q9Y616 596 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 CARNS1A5YM72 827 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 EMC8O43402 210 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 PIP5K1CO60331 668 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 TCRBP04435 133 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 C8orf89P0DMQ9 161 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 DDX6P26196 483 aaKnown RBP eCLIP16.38■□□□□ 0.21
SYNE3-202ENST00000553340 PRKAR1BP31321 381 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 SRP9P49458 86 aaKnown RBP16.38■□□□□ 0.21
SYNE3-202ENST00000553340 C16orf62Q7Z3J2 963 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 TPRA1Q86W33 373 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 SPERTQ8NA61 448 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 OR5W2Q8NH69 310 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 TMEM255BQ8WV15 326 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 TBX5Q99593 518 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 TRMT61BQ9BVS5 477 aaKnown RBP16.38■□□□□ 0.21
SYNE3-202ENST00000553340 AICDAQ9GZX7 198 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 UBQLN3Q9H347 655 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 SLCO1C1Q9NYB5 712 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 HEATR5BQ9P2D3 2071 aa16.38■□□□□ 0.21
SYNE3-202ENST00000553340 TEX13CA0A0J9YWL9 993 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 A0A1W2PR48 441 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 DAPL1A0PJW8 107 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 SOX30O94993 753 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 EPHA5P54756 1037 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 DUSP2Q05923 314 aa16.37■□□□□ 0.21
SYNE3-202ENST00000553340 RGS1Q08116 209 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms