RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PHF12Q96QT6 1004 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 G6PC3Q9BUM1 346 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 TBL1XR1Q9BZK7 514 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 PAIP1Q9H074 479 aaKnown RBP12.87□□□□□ -0.35
PTCH1-226ENST00000553011 RABEP2Q9H5N1 569 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 LDAHQ9H6V9 325 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 TMEM45AQ9NWC5 275 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 QPCTLQ9NXS2 382 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 KLHL14Q9P2G3 628 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 SH3BGRL2Q9UJC5 107 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 FBXL2Q9UKC9 423 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 ZNF835Q9Y2P0 537 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 PCDHGB3Q9Y5G1 929 aa12.87□□□□□ -0.35
PTCH1-226ENST00000553011 NCOA6Q14686 2063 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-226ENST00000553011 TRGV8A0A0C4DH27 118 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 HMGN4O00479 90 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 SOX30O94993 753 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 ANGPTL1O95841 491 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 ZCCHC18P0CG32 403 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 ENDOUP21128 410 aaKnown RBP12.86□□□□□ -0.35
PTCH1-226ENST00000553011 ATP6V1C1P21283 382 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 TBXA2RP21731 343 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 PTGS2P35354 604 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 RNF144AP50876 292 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-226ENST00000553011 FUT5Q11128 374 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 C3AR1Q16581 482 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 EIPR1Q53HC9 387 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 ARHGAP11AQ6P4F7 1023 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 Q6ZPB1 254 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-226ENST00000553011 C16orf62Q7Z3J2 963 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 GATSQ8NAP1 163 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 CHDHQ8NE62 594 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-226ENST00000553011 DUSP19Q8WTR2 217 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 SDF2Q99470 211 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 EXO5Q9H790 373 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 TPT1P8Q9HAU6 139 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 ACKR4Q9NPB9 350 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 UBQLN4Q9NRR5 601 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 SLAMF8Q9P0V8 285 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 PPP4R1LQ9P1A2 415 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 TNFRSF10DQ9UBN6 386 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 TINAGQ9UJW2 476 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 PCDHB14Q9Y5E9 798 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 CACNA1CQ13936 2221 aa12.86□□□□□ -0.35
PTCH1-226ENST00000553011 A0A096LPI6 279 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 TRGV5A0A0B4J1U4 118 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 A0A1B0GVC2 190 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 PRAMEF27A3QJZ7 478 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 CLEC18AA5D8T8 446 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 ALG1L2C9J202 215 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 NPIPA2E9PIF3 369 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 NPIPA3F8WFD2 350 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 FCMRO60667 390 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 HCN1O60741 890 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 CBR3O75828 277 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 ZIC2O95409 532 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-226ENST00000553011 KRT75O95678 551 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 AK1P00568 194 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 HPNP05981 417 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 TPOP07202 933 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 NGFRP08138 427 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 HOXB9P17482 250 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-226ENST00000553011 LCN1P31025 176 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 LSP1P33241 339 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 DCTP40126 519 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 CLK3P49761 638 aaKnown RBP12.85□□□□□ -0.35
PTCH1-226ENST00000553011 MVDP53602 400 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 UBAP2LQ14157 1087 aaKnown RBP12.85□□□□□ -0.35
PTCH1-226ENST00000553011 ARHGAP11BQ3KRB8 267 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 FLYWCH1Q4VC44 716 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 WIPI1Q5MNZ9 446 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-226ENST00000553011 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.85□□□□□ -0.35
PTCH1-226ENST00000553011 ATAD3BQ5T9A4 648 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 HEPHL1Q6MZM0 1159 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 CLEC18BQ6UXF7 455 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 YRDCQ86U90 279 aaKnown RBP12.85□□□□□ -0.35
PTCH1-226ENST00000553011 MSRB3Q8IXL7 192 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 CLEC18CQ8NCF0 446 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 FAM83FQ8NEG4 500 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-226ENST00000553011 OR4K17Q8NGC6 315 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 NEIL3Q8TAT5 605 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 DSN1Q9H410 356 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 SAR1AQ9NR31 198 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 SDHAF3Q9NRP4 125 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 EXD2Q9NVH0 621 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 MED11Q9P086 117 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 SPRR3Q9UBC9 169 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 ERRFI1Q9UJM3 462 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-226ENST00000553011 SLC6A5Q9Y345 797 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 HECTD1Q9ULT8 2610 aa12.85□□□□□ -0.35
PTCH1-226ENST00000553011 A0A1W2PP18 115 aa12.84□□□□□ -0.35
PTCH1-226ENST00000553011 NPIPB9F8W1W9 429 aa12.84□□□□□ -0.35
PTCH1-226ENST00000553011 SCDO00767 359 aa12.84□□□□□ -0.35
PTCH1-226ENST00000553011 AQP7O14520 342 aa12.84□□□□□ -0.35
PTCH1-226ENST00000553011 LRRTM2O43300 516 aa12.84□□□□□ -0.35
PTCH1-226ENST00000553011 NDUFB5O43674 189 aa12.84□□□□□ -0.35
PTCH1-226ENST00000553011 SUSD5O60279 629 aa12.84□□□□□ -0.35
PTCH1-226ENST00000553011 AGFG2O95081 481 aa12.84□□□□□ -0.35
PTCH1-226ENST00000553011 AGR2O95994 175 aa12.84□□□□□ -0.35
PTCH1-226ENST00000553011 ETFAP13804 333 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms