RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TMEM114B3SHH9 223 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 H0YC42 278 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 SCAMP2O15127 329 aaKnown RBP14.75□□□□□ -0.05
VPS29-207ENST00000549970 EMC8O43402 210 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 HCRTR2O43614 444 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 SLU7O95391 586 aaKnown RBP14.75□□□□□ -0.05
VPS29-207ENST00000549970 EPXP11678 715 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 MAPK1P28482 360 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 MAP3K8P41279 467 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 SUCLG1P53597 346 aaKnown RBP14.75□□□□□ -0.05
VPS29-207ENST00000549970 IST1P53990 364 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 TPD52P55327 224 aaPredicted RBP14.75□□□□□ -0.05
VPS29-207ENST00000549970 SORDQ00796 357 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 C17orf67Q0P5P2 114 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 ATP6AP1LQ52LC2 224 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 XKR7Q5GH72 579 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 FBXW10Q5XX13 1052 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 MFSD12Q6NUT3 480 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 FIGNL1Q6PIW4 674 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 SLC16A11Q8NCK7 471 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 OR7A2PQ8NGA2 310 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 GOT1L1Q8NHS2 421 aaPredicted RBP14.75□□□□□ -0.05
VPS29-207ENST00000549970 SMPDL3BQ92485 455 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 JADE3Q92613 823 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 HOXB13Q92826 284 aaPredicted RBP14.75□□□□□ -0.05
VPS29-207ENST00000549970 CAVIN3Q969G5 261 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 MTERF3Q96E29 417 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 C16orf58Q96GQ5 468 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 C3orf30Q96M34 536 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 YIPF4Q9BSR8 244 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 LIME1Q9H400 295 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 GALNT8Q9NY28 637 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 NTMQ9P121 344 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 ZDHHC2Q9UIJ5 367 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 ZNF337Q9Y3M9 751 aa14.75□□□□□ -0.05
VPS29-207ENST00000549970 A0A1W2PNV4 684 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 SLC22A20A6NK97 555 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 SHISA8B8ZZ34 492 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 KCNK2O95069 426 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 BPGMP07738 259 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 DDX5P17844 614 aaKnown RBP14.74□□□□□ -0.05
VPS29-207ENST00000549970 SERPINB5P36952 375 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 CLDN15P56746 228 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 PRR5P85299 388 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 PTGR1Q14914 329 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 DUSP5Q16690 384 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 WDR93Q6P2C0 686 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 LRIG3Q6UXM1 1119 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 ZAR1Q86SH2 424 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 CDC20BQ86Y33 519 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 COX18Q8N8Q8 333 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 GATSQ8NAP1 163 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 FNDC5Q8NAU1 212 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 FIG4Q92562 907 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 FAM120BQ96EK7 910 aaKnown RBP14.74□□□□□ -0.05
VPS29-207ENST00000549970 CHMP6Q96FZ7 201 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 PIGQQ9BRB3 760 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 PINK1Q9BXM7 581 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 PIGMQ9H3S5 423 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 SIRT3Q9NTG7 399 aaPredicted RBP14.74□□□□□ -0.05
VPS29-207ENST00000549970 ZCCHC3Q9NUD5 404 aaKnown RBP14.74□□□□□ -0.05
VPS29-207ENST00000549970 ATP6V1HQ9UI12 483 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 PACSIN3Q9UKS6 424 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 VDAC3Q9Y277 283 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 SNX8Q9Y5X2 465 aa14.74□□□□□ -0.05
VPS29-207ENST00000549970 HRNRQ86YZ3 2850 aaPredicted RBP14.74□□□□□ -0.05
VPS29-207ENST00000549970 IGLV3-32A0A0A0MS00 114 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 ALG1L2C9J202 215 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 LINC01387J3KSC0 135 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 NDUFB5O43674 189 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 TYROBPO43914 113 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 TNFSF13O75888 250 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 OXSR1O95747 527 aaPredicted RBP14.73□□□□□ -0.05
VPS29-207ENST00000549970 ALOX5P09917 674 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 LAMP1P11279 417 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 CPOXP36551 454 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 RPL3P39023 403 aaKnown RBP14.73□□□□□ -0.05
VPS29-207ENST00000549970 DIO3P55073 304 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 CLDN20P56880 219 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 EEFSECP57772 596 aaKnown RBP14.73□□□□□ -0.05
VPS29-207ENST00000549970 LASP1Q14847 261 aaKnown RBP14.73□□□□□ -0.05
VPS29-207ENST00000549970 DAZAP2Q15038 168 aaPredicted RBP14.73□□□□□ -0.05
VPS29-207ENST00000549970 KRT71Q3SY84 523 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 C6orf136Q5SQH8 315 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 CCNJQ5T5M9 372 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 IL23RQ5VWK5 629 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 CNEP1R1Q8N9A8 125 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 OR6Y1Q8NGX8 325 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 OR4C3Q8NH37 302 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 PPP1R14CQ8TAE6 165 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 PKNOX2Q96KN3 472 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 CCM2LQ9NUG4 571 aaPredicted RBP14.73□□□□□ -0.05
VPS29-207ENST00000549970 FBXO34Q9NWN3 711 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 ST6GALNAC2Q9UJ37 374 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 PLEKHA6Q9Y2H5 1048 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 ABCA4P78363 2273 aa14.73□□□□□ -0.05
VPS29-207ENST00000549970 A0A1W2PRB8 838 aa14.72□□□□□ -0.05
VPS29-207ENST00000549970 SMNDC1O75940 238 aaKnown RBP eCLIP14.72□□□□□ -0.056e-11■■■■□ 20.7
VPS29-207ENST00000549970 CD1EP15812 388 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms