RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 FAIM2Q9BWQ8 316 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 GRIP2Q9C0E4 1043 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 NGBQ9NPG2 151 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 GLRX2Q9NS18 164 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 FBXO34Q9NWN3 711 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 UTS2RQ9UKP6 389 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 ABCG2Q9UNQ0 655 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 B3GALT5Q9Y2C3 310 aa11.35□□□□□ -0.59
SCAF11-208ENST00000546534 TNPO3Q9Y5L0 923 aaKnown RBP11.35□□□□□ -0.59
SCAF11-208ENST00000546534 DPRXA6NFQ7 191 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 GMFGO60234 142 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 RAMP1O60894 148 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 SYNGR4O95473 234 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 NTN1O95631 604 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 FESP07332 822 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 AGTR1P30556 359 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 NUDT6P53370 316 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 PSG6Q00889 435 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 RUNX1T1Q06455 604 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 IFT88Q13099 833 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 TRAF3Q13114 568 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 NRF1Q16656 503 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 FAM83EQ2M2I3 478 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 SH2D4BQ5SQS7 431 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 SEZ6L2Q6UXD5 910 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 C3orf62Q6ZUJ4 267 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 TRIM46Q7Z4K8 759 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 GALNT10Q86SR1 603 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 LRRC8AQ8IWT6 810 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 GABRG1Q8N1C3 465 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 PPM1NQ8N819 430 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 OR7G2Q8NG99 324 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 PIWIL2Q8TC59 973 aaKnown RBP11.34□□□□□ -0.59
SCAF11-208ENST00000546534 ROBO4Q8WZ75 1007 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 MTBPQ96DY7 904 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 ADGRG7Q96K78 797 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 HDHD5Q9BXW7 423 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 FARSBQ9NSD9 589 aaKnown RBP11.34□□□□□ -0.59
SCAF11-208ENST00000546534 PAQR5Q9NXK6 330 aaPredicted RBP11.34□□□□□ -0.59
SCAF11-208ENST00000546534 CISD1Q9NZ45 108 aaKnown RBP11.34□□□□□ -0.59
SCAF11-208ENST00000546534 CPSF2Q9P2I0 782 aaKnown RBP11.34□□□□□ -0.59
SCAF11-208ENST00000546534 XPR1Q9UBH6 696 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 MCTS1Q9ULC4 181 aaKnown RBP11.34□□□□□ -0.59
SCAF11-208ENST00000546534 SNX24Q9Y343 169 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 SNX8Q9Y5X2 465 aa11.34□□□□□ -0.59
SCAF11-208ENST00000546534 ANK2Q01484 3957 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 PLOD3O60568 738 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 ESRRBO95718 433 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 TUBBP07437 444 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 SRD5A1P18405 259 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 IL32P24001 234 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 CCNG1P51959 295 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 C21orf58P58505 322 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 TRA2BP62995 288 aaKnown RBP11.33□□□□□ -0.6
SCAF11-208ENST00000546534 ACAP2Q15057 778 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 SFRP5Q5T4F7 317 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 CYB5R2Q6BCY4 276 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 METTL2BQ6P1Q9 378 aaKnown RBP11.33□□□□□ -0.6
SCAF11-208ENST00000546534 CLEC2AQ6UVW9 174 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 C1orf52Q8N6N3 182 aaKnown RBP11.33□□□□□ -0.6
SCAF11-208ENST00000546534 HSD17B8Q92506 261 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 NSUN5Q96P11 429 aaKnown RBP11.33□□□□□ -0.6
SCAF11-208ENST00000546534 HBEGFQ99075 208 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 NPAS1Q99742 590 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 ELOVL6Q9H5J4 265 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 FAM120CQ9NX05 1096 aaKnown RBP11.33□□□□□ -0.6
SCAF11-208ENST00000546534 TAS2R9Q9NYW1 312 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 STOML1Q9UBI4 398 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 VDAC3Q9Y277 283 aa11.33□□□□□ -0.6
SCAF11-208ENST00000546534 PCNX3Q9H6A9 2034 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 CCDC189A1A4V9 331 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 ELOA3DA6NLF2 546 aaPredicted RBP11.32□□□□□ -0.6
SCAF11-208ENST00000546534 SHISA9B4DS77 424 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 UBFD1O14562 309 aaKnown RBP11.32□□□□□ -0.6
SCAF11-208ENST00000546534 ADAMDEC1O15204 470 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 LMX1BO60663 402 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 PDYNP01213 254 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 C2P06681 752 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 IL3P08700 152 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 IGHV4-31P0DP07 118 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 BMP2P12643 396 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 ZNF16P17020 682 aaPredicted RBP11.32□□□□□ -0.6
SCAF11-208ENST00000546534 CLK3P49761 638 aaKnown RBP11.32□□□□□ -0.6
SCAF11-208ENST00000546534 DSCR9P59020 149 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 IRX1P78414 480 aaPredicted RBP11.32□□□□□ -0.6
SCAF11-208ENST00000546534 ZNF155Q12901 538 aaPredicted RBP11.32□□□□□ -0.6
SCAF11-208ENST00000546534 ELOA3BQ3SY89 546 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 CYP27C1Q4G0S4 372 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 FAM219BQ5XKK7 198 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 TFAP2EQ6VUC0 442 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 IL17RELQ6ZVW7 336 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 NUFIP2Q7Z417 695 aaKnown RBP11.32□□□□□ -0.6
SCAF11-208ENST00000546534 EXOC3L1Q86VI1 746 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 WDR75Q8IWA0 830 aaKnown RBP11.32□□□□□ -0.6
SCAF11-208ENST00000546534 PTGR2Q8N8N7 351 aaPredicted RBP11.32□□□□□ -0.6
SCAF11-208ENST00000546534 ELOA3Q8NG57 546 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 OR4F6Q8NGB9 312 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 OR2V1Q8NHB1 315 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 HTRA1Q92743 480 aa11.32□□□□□ -0.6
SCAF11-208ENST00000546534 EXOSC8Q96B26 276 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms