RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 ZNF551Q7Z340 670 aaPredicted RBP11.84□□□□□ -0.51
RTN3-213ENST00000543552 MARCH3Q86UD3 253 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 MISPQ8IVT2 679 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 C10orf107Q8IVU9 208 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 RIBC1Q8N443 379 aaPredicted RBP11.84□□□□□ -0.51
RTN3-213ENST00000543552 OR6Y1Q8NGX8 325 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 EPS8L3Q8TE67 593 aaKnown RBP11.84□□□□□ -0.51
RTN3-213ENST00000543552 ZNF845Q96IR2 970 aaPredicted RBP11.84□□□□□ -0.51
RTN3-213ENST00000543552 EGLN2Q96KS0 407 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 FCRL1Q96LA6 429 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 FAM111AQ96PZ2 611 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 PINK1Q9BXM7 581 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 PLEKHF2Q9H8W4 249 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 RNF122Q9H9V4 155 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 NEUROD4Q9HD90 331 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 ELOVL5Q9NYP7 299 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 SH3BP4Q9P0V3 963 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 FIS1Q9Y3D6 152 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 ZNF337Q9Y3M9 751 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 TESMINQ9Y4I5 508 aa11.84□□□□□ -0.51
RTN3-213ENST00000543552 FLNAP21333 2647 aaKnown RBP11.84□□□□□ -0.51
RTN3-213ENST00000543552 PRRC2AP48634 2157 aaKnown RBP11.84□□□□□ -0.51
RTN3-213ENST00000543552 MED12LQ86YW9 2145 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 B4DXG7 233 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 EMC8O43402 210 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 AKAP10O43572 662 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 NDUFB5O43674 189 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 NKX2-2O95096 273 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 CD8BP10966 210 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 FOSL1P15407 271 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 SDC1P18827 310 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 CD79BP40259 229 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 KCNJ5P48544 419 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 SERPINB4P48594 390 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 ZNF41P51814 821 aaPredicted RBP11.83□□□□□ -0.52
RTN3-213ENST00000543552 PRKAG1P54619 331 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 SLC18A2Q05940 514 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 PCLAFQ15004 111 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 SGCBQ16585 318 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.83□□□□□ -0.52
RTN3-213ENST00000543552 GRAMD1BQ3KR37 738 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 KANK2Q63ZY3 851 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 PLXDC2Q6UX71 529 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 DDIASQ8IXT1 998 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 C4orf33Q8N1A6 199 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 METTL25Q8N6Q8 603 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 NUP43Q8NFH3 380 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 SLC9A6Q92581 669 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 HOXB13Q92826 284 aaPredicted RBP11.83□□□□□ -0.52
RTN3-213ENST00000543552 CIDECQ96AQ7 238 aaPredicted RBP11.83□□□□□ -0.52
RTN3-213ENST00000543552 STARD4Q96DR4 205 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 PGM2Q96G03 612 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 APOPT1Q96IL0 206 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 TSSK3Q96PN8 268 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 MED18Q9BUE0 208 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 TNFRSF12AQ9NP84 129 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 FANCFQ9NPI8 374 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 BEX4Q9NWD9 120 aaPredicted RBP11.83□□□□□ -0.52
RTN3-213ENST00000543552 FLRT3Q9NZU0 649 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 NTMQ9P121 344 aa11.83□□□□□ -0.52
RTN3-213ENST00000543552 GXYLT2A0PJZ3 443 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 C17orf51A8MQB3 221 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 ALG1L2C9J202 215 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 SCDO00767 359 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 LSM1O15116 133 aaKnown RBP11.82□□□□□ -0.52
RTN3-213ENST00000543552 NPHS1O60500 1241 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 SOX30O94993 753 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 PLGP00747 810 aaPredicted RBP11.82□□□□□ -0.52
RTN3-213ENST00000543552 ALOX5P09917 674 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 LINC00032P0C843 101 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 POU2F1P14859 743 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 ME2P23368 584 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 SERPINB5P36952 375 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 FRKP42685 505 aaPredicted RBP11.82□□□□□ -0.52
RTN3-213ENST00000543552 PRIM2P49643 509 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 SIRPAP78324 504 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 FOXD4Q12950 439 aaPredicted RBP11.82□□□□□ -0.52
RTN3-213ENST00000543552 PDE7AQ13946 482 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 PON3Q15166 354 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 POU4F3Q15319 338 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 GALNTL6Q49A17 601 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 ANKRD26P1Q6NSI1 321 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 MFSD12Q6NUT3 480 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 VWA1Q6PCB0 445 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 Q6ZSR9 355 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 WDR75Q8IWA0 830 aaKnown RBP11.82□□□□□ -0.52
RTN3-213ENST00000543552 NATD1Q8N6N6 113 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 COX18Q8N8Q8 333 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 FNDC9Q8TBE3 224 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 FIG4Q92562 907 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 PIK3R3Q92569 461 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 CAVIN3Q969G5 261 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 ZBTB8AQ96BR9 441 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 PPP3R2Q96LZ3 170 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 GATA5Q9BWX5 397 aaPredicted RBP11.82□□□□□ -0.52
RTN3-213ENST00000543552 PRRG4Q9BZD6 226 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 UBQLN4Q9NRR5 601 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 ATAD3AQ9NVI7 634 aa11.82□□□□□ -0.52
RTN3-213ENST00000543552 MCTS1Q9ULC4 181 aaKnown RBP11.82□□□□□ -0.52
RTN3-213ENST00000543552 PROCRQ9UNN8 238 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms