RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 DEFB113Q30KQ7 82 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 ZCCHC12Q6PEW1 402 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 LRIG3Q6UXM1 1119 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 ZNF551Q7Z340 670 aaPredicted RBP11.84□□□□□ -0.51
RTN3-212ENST00000543123 MARCH3Q86UD3 253 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 MISPQ8IVT2 679 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 C10orf107Q8IVU9 208 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 RIBC1Q8N443 379 aaPredicted RBP11.84□□□□□ -0.51
RTN3-212ENST00000543123 OR6Y1Q8NGX8 325 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 EPS8L3Q8TE67 593 aaKnown RBP11.84□□□□□ -0.51
RTN3-212ENST00000543123 ZNF845Q96IR2 970 aaPredicted RBP11.84□□□□□ -0.51
RTN3-212ENST00000543123 EGLN2Q96KS0 407 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 FCRL1Q96LA6 429 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 FAM111AQ96PZ2 611 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 PINK1Q9BXM7 581 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 PLEKHF2Q9H8W4 249 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 RNF122Q9H9V4 155 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 NEUROD4Q9HD90 331 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 ELOVL5Q9NYP7 299 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 SH3BP4Q9P0V3 963 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 FIS1Q9Y3D6 152 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 ZNF337Q9Y3M9 751 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 TESMINQ9Y4I5 508 aa11.84□□□□□ -0.51
RTN3-212ENST00000543123 FLNAP21333 2647 aaKnown RBP11.84□□□□□ -0.51
RTN3-212ENST00000543123 PRRC2AP48634 2157 aaKnown RBP11.84□□□□□ -0.51
RTN3-212ENST00000543123 MED12LQ86YW9 2145 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 B4DXG7 233 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 EMC8O43402 210 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 AKAP10O43572 662 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 NDUFB5O43674 189 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 NKX2-2O95096 273 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 CD8BP10966 210 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 FOSL1P15407 271 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 SDC1P18827 310 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 CD79BP40259 229 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 KCNJ5P48544 419 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 SERPINB4P48594 390 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 ZNF41P51814 821 aaPredicted RBP11.83□□□□□ -0.52
RTN3-212ENST00000543123 PRKAG1P54619 331 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 SLC18A2Q05940 514 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 PCLAFQ15004 111 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 SGCBQ16585 318 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.83□□□□□ -0.52
RTN3-212ENST00000543123 GRAMD1BQ3KR37 738 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 KANK2Q63ZY3 851 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 PLXDC2Q6UX71 529 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 DDIASQ8IXT1 998 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 C4orf33Q8N1A6 199 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 METTL25Q8N6Q8 603 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 NUP43Q8NFH3 380 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 SLC9A6Q92581 669 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 HOXB13Q92826 284 aaPredicted RBP11.83□□□□□ -0.52
RTN3-212ENST00000543123 CIDECQ96AQ7 238 aaPredicted RBP11.83□□□□□ -0.52
RTN3-212ENST00000543123 STARD4Q96DR4 205 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 PGM2Q96G03 612 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 APOPT1Q96IL0 206 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 TSSK3Q96PN8 268 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 MED18Q9BUE0 208 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 TNFRSF12AQ9NP84 129 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 FANCFQ9NPI8 374 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 BEX4Q9NWD9 120 aaPredicted RBP11.83□□□□□ -0.52
RTN3-212ENST00000543123 FLRT3Q9NZU0 649 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 NTMQ9P121 344 aa11.83□□□□□ -0.52
RTN3-212ENST00000543123 GXYLT2A0PJZ3 443 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 C17orf51A8MQB3 221 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 ALG1L2C9J202 215 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 SCDO00767 359 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 LSM1O15116 133 aaKnown RBP11.82□□□□□ -0.52
RTN3-212ENST00000543123 NPHS1O60500 1241 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 SOX30O94993 753 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 PLGP00747 810 aaPredicted RBP11.82□□□□□ -0.52
RTN3-212ENST00000543123 ALOX5P09917 674 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 LINC00032P0C843 101 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 POU2F1P14859 743 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 ME2P23368 584 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 SERPINB5P36952 375 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 FRKP42685 505 aaPredicted RBP11.82□□□□□ -0.52
RTN3-212ENST00000543123 PRIM2P49643 509 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 SIRPAP78324 504 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 FOXD4Q12950 439 aaPredicted RBP11.82□□□□□ -0.52
RTN3-212ENST00000543123 PDE7AQ13946 482 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 PON3Q15166 354 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 POU4F3Q15319 338 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 GALNTL6Q49A17 601 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 ANKRD26P1Q6NSI1 321 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 MFSD12Q6NUT3 480 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 VWA1Q6PCB0 445 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 Q6ZSR9 355 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 WDR75Q8IWA0 830 aaKnown RBP11.82□□□□□ -0.52
RTN3-212ENST00000543123 NATD1Q8N6N6 113 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 COX18Q8N8Q8 333 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 FNDC9Q8TBE3 224 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 FIG4Q92562 907 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 PIK3R3Q92569 461 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 CAVIN3Q969G5 261 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 ZBTB8AQ96BR9 441 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 PPP3R2Q96LZ3 170 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 GATA5Q9BWX5 397 aaPredicted RBP11.82□□□□□ -0.52
RTN3-212ENST00000543123 PRRG4Q9BZD6 226 aa11.82□□□□□ -0.52
RTN3-212ENST00000543123 UBQLN4Q9NRR5 601 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms