RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	GSTM3	P21266	225 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	ATP5A1	P25705	553 aa	Known RBP	11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	CMPK1	P30085	196 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	NTS	P30990	170 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	TAS2R41	P59536	307 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	TMEM92	Q6UXU6	159 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	SHISA5	Q8N114	240 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	LINC00471	Q8N535	108 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	RPLP0P6	Q8NHW5	317 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	PATE1	Q8WXA2	126 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	KAT2A	Q92830	837 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	RAB11FIP5	Q9BXF6	653 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	SRMS	Q9H3Y6	488 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF624	Q9P2J8	865 aa	Predicted RBP	11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	NLK	Q9UBE8	527 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	NCKAP1	Q9Y2A7	1128 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	EXOSC1	Q9Y3B2	195 aa	Known RBP	11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	ALG5	Q9Y673	324 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	CPSF4L	A6NMK7	179 aa	Known RBP	11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	SNTN	A6NMZ2	147 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	CPNE3	O75131	537 aa	Known RBP	11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	HMGN2	P05204	90 aa	Known RBP	11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	NDUFV2	P19404	249 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	CPN2	P22792	545 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	FGF9	P31371	208 aa	Predicted RBP	11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	SLC1A3	P43003	542 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	EFR3A	Q14156	821 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	CD200R1L	Q6Q8B3	271 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	BBS10	Q8TAM1	723 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	C17orf50	Q8WW18	174 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	ZG16B	Q96DA0	208 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	BMF	Q96LC9	184 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	NECTIN4	Q96NY8	510 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	ATF6B	Q99941	703 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	SPATA5L1	Q9BVQ7	753 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	GPR55	Q9Y2T6	319 aa	Predicted RBP	11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	ASB4	Q9Y574	426 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	COLEC10	Q9Y6Z7	277 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	TICRR	Q7Z2Z1	1910 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	GSAP	A4D1B5	854 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	FAM25A	B3EWG3	89 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	FAM25C	B3EWG5	89 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	FAM25G	B3EWG6	89 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	PRICKLE3	O43900	615 aa	Predicted RBP	11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	ALX3	O95076	343 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	CEL	P19835	753 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	ALAS2	P22557	587 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	HLA-DMA	P28067	261 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	TEAD1	P28347	426 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	AVPR1B	P47901	424 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	KHK	P50053	298 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	CDH11	P55287	796 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	MLC1	Q15049	377 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	LTB4R	Q15722	352 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	ZIC1	Q15915	447 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	SLC30A6	Q6NXT4	461 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	OR4N5	Q8IXE1	308 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	TMEFF1	Q8IYR6	380 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	CADM2	Q8N3J6	435 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF485	Q8NCK3	441 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	TTL	Q8NG68	377 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	OR2L5	Q8NG80	312 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	OR9A2	Q8NGT5	310 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	HMGB4	Q8WW32	186 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	SENP5	Q96HI0	755 aa	Predicted RBP	11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	RIPOR3	Q96MK2	946 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	SLC38A2	Q96QD8	506 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	C6orf106	Q9H6K1	298 aa	Predicted RBP	11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	ISYNA1	Q9NPH2	558 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	GIMAP4	Q9NUV9	329 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	RBFOX1	Q9NWB1	397 aa	Known RBP	11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	IL20RA	Q9UHF4	553 aa		11.69	□□□□□ -0.54
RNF4-222	ENST00000541204	C2orf92	A0A1B0GVN3	265 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	TRDV1	A0A1B0GX56	115 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	IRGM	A1A4Y4	181 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	HCN1	O60741	890 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	DNAJB6	O75190	326 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	POLR2C	P19387	275 aa	Predicted RBP	11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	MC3R	P41968	323 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	HTR4	Q13639	388 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF791	Q3KP31	576 aa	Predicted RBP	11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	TMEM35A	Q53FP2	167 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	PRRT3	Q5FWE3	981 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	MARCH9	Q86YJ5	346 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	SUN3	Q8TAQ9	357 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	NEIL3	Q8TAT5	605 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	GNPDA2	Q8TDQ7	276 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	UPRT	Q96BW1	309 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	SOST	Q9BQB4	213 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	PITHD1	Q9GZP4	211 aa	Predicted RBP	11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	BCL2L10	Q9HD36	194 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	SEMA4G	Q9NTN9	838 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	ACOXL	Q9NUZ1	547 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	ADAM29	Q9UKF5	820 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	FAM240B	A0A1B0GVZ2	78 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	TCRBV21S2A2	A0A5A6	115 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF860	A6NHJ4	632 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	PRR19	A6NJB7	356 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	CD8B2	A6NJW9	211 aa		11.68	□□□□□ -0.54
RNF4-222	ENST00000541204	NOTO	A8MTQ0	251 aa		11.68	□□□□□ -0.54

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