RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 HEPHL1Q6MZM0 1159 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 KIAA1324Q6UXG2 1013 aaKnown RBP8.3□□□□□ -1.08
YBX3-208ENST00000540447 FAM196AQ6ZSG2 479 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 TMEM173Q86WV6 379 aaPredicted RBP8.3□□□□□ -1.08
YBX3-208ENST00000540447 COMMD1Q8N668 190 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 FBXO15Q8NCQ5 510 aaPredicted RBP8.3□□□□□ -1.08
YBX3-208ENST00000540447 OR8D4Q8NGM9 314 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 OR13C4Q8NGS5 318 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 IL31RAQ8NI17 732 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 ACER1Q8TDN7 264 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 GPR119Q8TDV5 335 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 GLYATL1Q969I3 302 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.3□□□□□ -1.08
YBX3-208ENST00000540447 PGAP2Q9UHJ9 254 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 KIAA0556O60303 1618 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 NFASCO94856 1347 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 QRICH2Q9H0J4 1663 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 OR6C76A6NM76 312 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 AP4M1O00189 453 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 SERPINA2P20848 420 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 SLC6A9P48067 706 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 IRF4Q15306 451 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 AAK1Q2M2I8 961 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 NDUFAF7Q7L592 441 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 ZFPM1Q8IX07 1006 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 CCDC116Q8IYX3 515 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 GORASP2Q9H8Y8 452 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 MAP3K4Q9Y6R4 1608 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 DISP2A7MBM2 1401 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 SRPX2O60687 465 aaPredicted RBP8.3□□□□□ -1.08
YBX3-208ENST00000540447 OR2F2O95006 317 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 UBL3O95164 117 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 ITGB2P05107 769 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 PFKMP08237 780 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 CSF2RAP15509 400 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 ELK1P19419 428 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 GABRA5P31644 462 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 C1QTNF8P60827 252 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 OR2F1Q13607 317 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 CEBPEQ15744 281 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 METTL7BQ6UX53 244 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 OR2AG1Q9H205 316 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 ESRP2Q9H6T0 727 aaKnown RBP8.3□□□□□ -1.08
YBX3-208ENST00000540447 HYKKA2RU49 373 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 G3V2L1 256 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 LGI1O95970 557 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 MT-CO2P00403 227 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 HOXB5P09067 269 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 RAB40ALP0C0E4 278 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 SLC35E2BP0CK96 405 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 HMGCLP35914 325 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 PBX3P40426 434 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 GATMP50440 423 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 GPR143P51810 404 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 GP2P55259 537 aaKnown RBP8.3□□□□□ -1.08
YBX3-208ENST00000540447 OLIG2Q13516 323 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 RPE65Q16518 533 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 CES4AQ5XG92 561 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 SAXO2Q658L1 398 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 RBMS3Q6XE24 437 aaKnown RBP8.3□□□□□ -1.08
YBX3-208ENST00000540447 SIGLECL1Q8N7X8 197 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 BPIFCQ8NFQ6 507 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 OR4M1Q8NGD0 313 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 PROKR1Q8TCW9 393 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 C16orf78Q8WTQ4 265 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 RAB40AQ8WXH6 277 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 RAB8BQ92930 207 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 ZDHHC5Q9C0B5 715 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 GRHPRQ9UBQ7 328 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 GDF2Q9UK05 429 aaPredicted RBP8.3□□□□□ -1.08
YBX3-208ENST00000540447 SLC22A14Q9Y267 594 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 MAGI3Q5TCQ9 1506 aa8.3□□□□□ -1.08
YBX3-208ENST00000540447 RECQL4O94761 1208 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 GDF5P43026 501 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 MRPS34P82930 218 aaKnown RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 RCAN2Q14206 197 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 UBXN2BQ14CS0 331 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 PLK5Q496M5 336 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 FBXL6Q8N531 539 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 CCDC71LQ8N9Z2 235 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 OR7D4Q8NG98 312 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 TRMT61BQ9BVS5 477 aaKnown RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 ANKRD19PQ9H560 264 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 RYDENQ9NUL5 291 aaKnown RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 DNAJC15Q9Y5T4 150 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 ZNF726A6NNF4 738 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 TRAF3IP2O43734 574 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 AOC2O75106 756 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 UQCRC2P22695 453 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 HSD17B7P56937 341 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 HBMQ6B0K9 141 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 BPIFB2Q8N4F0 458 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 OR13C3Q8NGS6 347 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 ZNF778Q96MU6 729 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 LINC00052Q96N35 136 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 SLC2A11Q9BYW1 496 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 C11orf49Q9H6J7 331 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 ZNF207O43670 478 aaKnown RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 TLX3O43711 291 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 DIRAS3O95661 229 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms