RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TAPBPLQ9BX59 468 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 ACTRT3Q9BYD9 372 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 PRRG3Q9BZD7 231 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SIAEQ9HAT2 523 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SSR3Q9UNL2 185 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SPAG17Q6Q759 2223 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 TICRRQ7Z2Z1 1910 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 A0A0A6YYC8 382 aaPredicted RBP15.76■□□□□ 0.11
USP28-208ENST00000540438 A0A1W2PQL4 384 aaPredicted RBP15.76■□□□□ 0.11
USP28-208ENST00000540438 SHISA3A0PJX4 238 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SH3D21A4FU49 640 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 I3L1I5 382 aaPredicted RBP15.76■□□□□ 0.11
USP28-208ENST00000540438 SAGP10523 405 aaPredicted RBP15.76■□□□□ 0.11
USP28-208ENST00000540438 GCGRP47871 477 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 PGDP52209 483 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 RAB25P57735 213 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 DMPKQ09013 629 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 C1DQ13901 141 aaKnown RBP15.76■□□□□ 0.11
USP28-208ENST00000540438 FBXO43Q4G163 708 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 MRPL2Q5T653 305 aaKnown RBP15.76■□□□□ 0.11
USP28-208ENST00000540438 C1orf94Q6P1W5 598 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SYT9Q86SS6 491 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SLC7A5P1Q8MH63 180 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SLC22A18ASQ8N1D0 253 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 TTLQ8NG68 377 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 OR56A1Q8NGH5 318 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 DIO2Q92813 273 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 SLC30A2Q9BRI3 323 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 MCOLN1Q9GZU1 580 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 ADAM29Q9UKF5 820 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 ACAD8Q9UKU7 415 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 BOLA1Q9Y3E2 137 aa15.76■□□□□ 0.11
USP28-208ENST00000540438 A0A0G2JPF8 293 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 HNRNPCL2B2RXH8 293 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 HNRNPCL3B7ZW38 293 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 PSMD9O00233 223 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 UBXN7O94888 489 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 HNRNPCL4P0DMR1 293 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 ELOAQ14241 798 aaKnown RBP15.75■□□□□ 0.11
USP28-208ENST00000540438 CADM2Q8N3J6 435 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 ARL14Q8N4G2 192 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 COX18Q8N8Q8 333 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 OR13C2Q8NGS9 318 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 ASB15Q8WXK1 588 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 DIRAS2Q96HU8 199 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 RIPOR3Q96MK2 946 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 ZNF559Q9BR84 538 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 HINT3Q9NQE9 182 aaKnown RBP15.75■□□□□ 0.11
USP28-208ENST00000540438 DAPP1Q9UN19 280 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 NCKAP1Q9Y2A7 1128 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 TSC22D4Q9Y3Q8 395 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 NUP210Q8TEM1 1887 aaPredicted RBP15.75■□□□□ 0.11
USP28-208ENST00000540438 RAB36O95755 333 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 IFI30P13284 250 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 MAKP20794 623 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 TBXA2RP21731 343 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 HTR2AP28223 471 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 NOS3P29474 1203 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 SNRPGP62308 76 aaKnown RBP15.75■□□□□ 0.11
USP28-208ENST00000540438 LRIT3Q3SXY7 679 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 BHLHB9Q6PI77 547 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 THSD4Q6ZMP0 1018 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 LAPTM4BQ86VI4 370 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 PRSS58Q8IYP2 241 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 ZBTB8BQ8NAP8 495 aaPredicted RBP15.75■□□□□ 0.11
USP28-208ENST00000540438 SLC37A2Q8TED4 501 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 RASSF5Q8WWW0 418 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 CCDC3Q9BQI4 270 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 TRPV4Q9HBA0 871 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 CNOT2Q9NZN8 540 aaKnown RBP15.75■□□□□ 0.11
USP28-208ENST00000540438 ZNF443Q9Y2A4 671 aaPredicted RBP15.75■□□□□ 0.11
USP28-208ENST00000540438 DTX4Q9Y2E6 619 aa15.75■□□□□ 0.11
USP28-208ENST00000540438 B3GALT2O43825 422 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 SOX30O94993 753 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 MSL3P1P0C860 447 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 LIMS3P0CW19 117 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 LIMS4P0CW20 117 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 MYF5P13349 255 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 OMPP47874 163 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 NFATC4Q14934 902 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 TRAM2Q15035 370 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 PRAMEF17Q5VTA0 474 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 SIRT6Q8N6T7 355 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 KIAA1958Q8N8K9 716 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 PIGXQ8TBF5 258 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 LMF1Q96S06 567 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 SDF2Q99470 211 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 GPR174Q9BXC1 333 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 OR6C2Q9NZP2 312 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 CD207Q9UJ71 328 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 C4orf47A7E2U8 309 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 C17orf51A8MQB3 221 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 FAM171A2A8MVW0 826 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 MPZL2O60487 215 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 SDC3O75056 442 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 RFPL3O75679 317 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 ST6GAL1P15907 406 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 UGT2B10P36537 528 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 MAZP56270 477 aaKnown RBP15.74■□□□□ 0.11
USP28-208ENST00000540438 CDK5Q00535 292 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms