RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 CRISP1P54107 249 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 C10orf120Q5SQS8 335 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 ZNF697Q5TEC3 545 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 BCDIN3DQ7Z5W3 292 aaKnown RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 TMEM150AQ86TG1 271 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 TSPAN33Q86UF1 283 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 SKA3Q8IX90 412 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 TOMM5Q8N4H5 51 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 SPPL2AQ8TCT8 520 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 LCORQ96JN0 433 aaPredicted RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 RHOVQ96L33 236 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 ABHD1Q96SE0 405 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 GAS2L1Q99501 681 aaPredicted RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 SSX3Q99909 188 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 VRK1Q99986 396 aaPredicted RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 NTMT1Q9BV86 223 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 TRIM62Q9BVG3 475 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 PRO3102Q9H379 93 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 POPDC3Q9HBV1 291 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 NPDC1Q9NQX5 325 aaPredicted RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 NKIRAS2Q9NYR9 191 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 NFKBIL1Q9UBC1 381 aaPredicted RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 FKBPLQ9UIM3 349 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 CBY1Q9Y3M2 126 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 RPL36Q9Y3U8 105 aaKnown RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 SNX10Q9Y5X0 201 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 TMEM218A2RU14 115 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 LRIT2A6NDA9 550 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 TLR4O00206 839 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 IRAK2O43187 625 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 SUV39H1O43463 412 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 EIF4EP06730 217 aaKnown RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 ADCYAP1P18509 176 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 FEN1P39748 380 aaKnown RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 CD79BP40259 229 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 PITPNBP48739 271 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 RAP2BP61225 183 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 SNRPGP62308 76 aaKnown RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 HMGCS1Q01581 520 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 FABP9Q0Z7S8 132 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 TPBGQ13641 420 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 DUOXA1Q1HG43 343 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 RNASE12Q5GAN4 147 aaKnown RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 OR2G6Q5TZ20 316 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 ZNF613Q6PF04 617 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 WDR53Q7Z5U6 358 aaPredicted RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 ARMC10Q8N2F6 343 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 OR5M3Q8NGP4 307 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 STK35Q8TDR2 534 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 FATE1Q969F0 183 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 CPNE4Q96A23 557 aaPredicted RBP8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 MEGF10Q96KG7 1140 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 LURAP1Q96LR2 239 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 NEU1Q99519 415 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 TKTL2Q9H0I9 626 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 IL21Q9HBE4 155 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 GBF1Q92538 1859 aa8.89□□□□□ -0.99
CTNNA1-243ENST00000540387 C9orf170A2RU37 121 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 TMEM229AB2RXF0 380 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 PRR23D1E9PI22 279 aaPredicted RBP8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 NRG2O14511 850 aaPredicted RBP8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 RFXANKO14593 260 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 AQP8O94778 261 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 MT-ND4P03905 459 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 F11P03951 625 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 CD3GP09693 182 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 PRR23D2P0DMB1 279 aaPredicted RBP8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 GJA1P17302 382 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 PSMA3P25788 255 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 GABRA5P31644 462 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 RFX3P48380 749 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 SGO1Q5FBB7 561 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 GAREM2Q75VX8 874 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 LRRC28Q86X40 367 aaPredicted RBP8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 SLC44A3Q8N4M1 653 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 ZFP41Q8N8Y5 198 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 BOLLQ8N9W6 283 aaKnown RBP8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 TMEM185AQ8NFB2 350 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 AARSD1Q9BTE6 412 aaKnown RBP8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 C20orf85Q9H1P6 137 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 MTG2Q9H4K7 406 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 SARS2Q9NP81 518 aaKnown RBP8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 HCFC1R1Q9NWW0 138 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 TEX10Q9NXF1 929 aaPredicted RBP8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 MARCH2Q9P0N8 246 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 ZMYM5Q9UJ78 669 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 FLVCR2Q9UPI3 526 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 FAM50BQ9Y247 325 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 TRDV1A0A1B0GX56 115 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 OR2M5A3KFT3 312 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 METTL21EPA6NDL7 271 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 CLIC1O00299 241 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 SLC28A2O43868 658 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 LILRB5O75023 590 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 NIPSNAP2O75323 286 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 HIST1H2ABP04908 130 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 GP1BAP07359 652 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 HOXC4P09017 264 aaPredicted RBP8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 GABRR2P28476 465 aa8.88□□□□□ -0.99
CTNNA1-243ENST00000540387 AQP1P29972 269 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms