RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 KLHL1Q9NR64 748 aa11.91□□□□□ -0.5
CCDC42-202ENST00000539522 HPF1Q9NWY4 346 aa11.91□□□□□ -0.5
CCDC42-202ENST00000539522 SUCOQ9UBS9 1254 aaKnown RBP11.91□□□□□ -0.5
CCDC42-202ENST00000539522 USP22Q9UPT9 525 aa11.91□□□□□ -0.5
CCDC42-202ENST00000539522 CORO2BQ9UQ03 480 aa11.91□□□□□ -0.5
CCDC42-202ENST00000539522 PCDHGB6Q9Y5F9 930 aa11.91□□□□□ -0.5
CCDC42-202ENST00000539522 NINQ8N4C6 2090 aa11.91□□□□□ -0.5
CCDC42-202ENST00000539522 SHANK1Q9Y566 2161 aa11.91□□□□□ -0.5
CCDC42-202ENST00000539522 C2orf72A6NCS6 295 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 LRRC3CA6NJW4 275 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 ASNA1O43681 348 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 REM1O75628 298 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 KRT75O95678 551 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 CHRM4P08173 479 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 TFPTP0C1Z6 253 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 GPX2P18283 190 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 HTR1EP28566 365 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 CHI3L1P36222 383 aaPredicted RBP11.9□□□□□ -0.5
CCDC42-202ENST00000539522 CASP3P42574 277 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 DNASE1L1P49184 302 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 GSK3BP49841 420 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 PNLIPRP2P54317 469 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 MTPNP58546 118 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 MS4A2Q01362 244 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 NFATC3Q12968 1075 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 KPNB1Q14974 876 aaKnown RBP11.9□□□□□ -0.5
CCDC42-202ENST00000539522 RGNQ15493 299 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.9□□□□□ -0.5
CCDC42-202ENST00000539522 GRAMD1BQ3KR37 738 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 ARHGAP11BQ3KRB8 267 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 DCST2Q5T1A1 773 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 TYW3Q6IPR3 259 aaKnown RBP11.9□□□□□ -0.5
CCDC42-202ENST00000539522 TMEM81Q6P7N7 255 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 FRRS1Q6ZNA5 592 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 NUP54Q7Z3B4 507 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 LSRQ86X29 649 aaPredicted RBP11.9□□□□□ -0.5
CCDC42-202ENST00000539522 PTOV1Q86YD1 416 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 ZNF843Q8N446 348 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 COX18Q8N8Q8 333 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 ANKFN1Q8N957 763 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 MAL2Q969L2 176 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 ASB9Q96DX5 294 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 ZNF583Q96ND8 569 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 BARD1Q99728 777 aaKnown RBP11.9□□□□□ -0.5
CCDC42-202ENST00000539522 KCTD14Q9BQ13 255 aaPredicted RBP11.9□□□□□ -0.5
CCDC42-202ENST00000539522 ANGPTL4Q9BY76 406 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.9□□□□□ -0.5
CCDC42-202ENST00000539522 RASSF4Q9H2L5 321 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 RAD21L1Q9H4I0 556 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 KAT8Q9H7Z6 458 aaKnown RBP11.9□□□□□ -0.5
CCDC42-202ENST00000539522 GALNT9Q9HCQ5 603 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 Q9N2J8 555 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 PACSIN3Q9UKS6 424 aa11.9□□□□□ -0.5
CCDC42-202ENST00000539522 FAF1Q9UNN5 650 aaPredicted RBP11.9□□□□□ -0.5
CCDC42-202ENST00000539522 TRAV17A0A0B4J275 112 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 TTC36A6NLP5 189 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 ACOT8O14734 319 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 BCAS1O75363 584 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 TRIM3O75382 744 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 GMNNO75496 209 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 GCM2O75603 506 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 GLSO94925 669 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 SFTPCP11686 197 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 TCN1P20061 433 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 MSX2P35548 267 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 RFC3P40938 356 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 RNF144AP50876 292 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 NRG3P56975 720 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 POU6F2P78424 691 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 KLRB1Q12918 225 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 ZNHIT3Q15649 155 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 MAPK14Q16539 360 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 ZNF324BQ6AW86 544 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 RPUSD3Q6P087 351 aaKnown RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 HMGN2P46Q86SG4 172 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 DHFR2Q86XF0 187 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 CALHM3Q86XJ0 350 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 POGLUT1Q8NBL1 392 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 OR2M7Q8NG81 312 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 ADAMTS15Q8TE58 950 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 TM9SF4Q92544 642 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 ZNF524Q96C55 264 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 CCDC124Q96CT7 223 aaKnown RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 SGCZQ96LD1 299 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 FRMD6Q96NE9 622 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 ZNF350Q9GZX5 532 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 SAP130Q9H0E3 1048 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 SLC38A1Q9H2H9 487 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 ALG2Q9H553 416 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 TUBA8Q9NY65 449 aaPredicted RBP11.89□□□□□ -0.51
CCDC42-202ENST00000539522 ABI3Q9P2A4 366 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 OR10H1Q9Y4A9 318 aa11.89□□□□□ -0.51
CCDC42-202ENST00000539522 DSPPQ9NZW4 1301 aa11.88□□□□□ -0.51
CCDC42-202ENST00000539522 ANKRD33BA6NCL7 494 aa11.88□□□□□ -0.51
CCDC42-202ENST00000539522 SUV39H1O43463 412 aa11.88□□□□□ -0.51
CCDC42-202ENST00000539522 OIP5O43482 229 aa11.88□□□□□ -0.51
CCDC42-202ENST00000539522 PEX1O43933 1283 aa11.88□□□□□ -0.51
CCDC42-202ENST00000539522 ABCB7O75027 752 aa11.88□□□□□ -0.51
CCDC42-202ENST00000539522 ENTPD5O75356 428 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms