RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 TBC1D17Q9HA65 648 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 DDX28Q9NUL7 540 aaKnown RBP14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 PTGFRNQ9P2B2 879 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 TNFRSF10DQ9UBN6 386 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 B4DXG7 233 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 HCN1O60741 890 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 THBS1P07996 1170 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 SLC35G6P0C7Q6 338 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 TLX1P31314 330 aaPredicted RBP14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 RCVRNP35243 200 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 SOX18P35713 384 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 SOX9P48436 509 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 EVX1P49640 407 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 RNF144AP50876 292 aaPredicted RBP14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 CAV3P56539 151 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 SUZ12Q15022 739 aaKnown RBP14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 EIPR1Q53HC9 387 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 LCN1P1Q5VSP4 162 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 FBXO42Q6P3S6 717 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 NEIL3Q8TAT5 605 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 TP53INP1Q96A56 240 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 TM4SF19Q96DZ7 209 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 FRMD6Q96NE9 622 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 SDF2Q99470 211 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 TMED9Q9BVK6 235 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 UBQLN3Q9H347 655 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 FGF22Q9HCT0 170 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 PRDM9Q9NQV7 894 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 TBC1D29Q9UFV1 150 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 SLC7A7Q9UM01 511 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 PCDHGB7Q9Y5F8 929 aa14.95□□□□□ -0.02
CHMP1A-202ENST00000535997 TBC1D3DA0A087WVF3 549 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 TBC1D3IA0A087WXS9 549 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 TBC1D3EA0A087X179 549 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 SMIM30A4D0T7 59 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 TBC1D3LB9A6J9 549 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 J3QRE1 110 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 GABRPO00591 440 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 CDC42EP2O14613 210 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 HLA-DQB1P01920 261 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 TBC1D3HP0C7X1 549 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 SLC2A2P11168 524 aaPredicted RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 BDH1Q02338 343 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 TBRG1Q3YBR2 411 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 TBC1D3CQ6IPX1 549 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 MZT2AQ6P582 158 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 ZNF322Q6U7Q0 402 aaPredicted RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 USP53Q70EK8 1073 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 CPOQ8IVL8 374 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 TBC1D3Q8IZP1 549 aaPredicted RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 RNF113BQ8IZP6 322 aaKnown RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 Q8N402 240 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 C19orf18Q8NEA5 215 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 BRIX1Q8TDN6 353 aaKnown RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 SPRYD4Q8WW59 207 aaPredicted RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 JPH3Q8WXH2 748 aaPredicted RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 SAMD8Q96LT4 415 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 FCRL4Q96PJ5 515 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 OR2M4Q96R27 311 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 SERINC2Q96SA4 455 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 ATF6BQ99941 703 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 RNF121Q9H920 327 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 CSNK1G3Q9Y6M4 447 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 PRSS38A1L453 326 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 FAM47E-STBD1D6RA91 191 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 SLC31A1O15431 190 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 SMIM10L1P0DMW3 83 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 MYL9P24844 172 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 APEX1P27695 318 aaKnown RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 MAT2AP31153 395 aaKnown RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 KIR2DL3P43628 341 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 GCGRP47871 477 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 ZNF136P52737 540 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 EEF1A1P68104 462 aaKnown RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 CNIH2Q6PI25 160 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 ZNF836Q6ZNA1 936 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 RANBP3LQ86VV4 465 aaPredicted RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 GID4Q8IVV7 300 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 BBS1Q8NFJ9 593 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 SMIM10Q96HG1 83 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 SRMSQ9H3Y6 488 aa14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 HINT3Q9NQE9 182 aaKnown RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 NDRG2Q9UN36 371 aaKnown RBP14.94□□□□□ -0.02
CHMP1A-202ENST00000535997 ATG2BQ96BY7 2078 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 URADA6NGE7 173 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 BTN3A3O00478 584 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 SCAMP1O15126 338 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 PIP5K1CO60331 668 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 SLC2A10O95528 541 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 HOXC4P09017 264 aaPredicted RBP14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 SSTR4P31391 388 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 KIR2DL1P43626 348 aaPredicted RBP14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 FZD5Q13467 585 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 RIN1Q13671 783 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 DUSP5Q16690 384 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 ITPRIPL2Q3MIP1 535 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 EOGTQ5NDL2 527 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 CXXC5Q7LFL8 322 aaKnown RBP14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 MARCH9Q86YJ5 346 aa14.93□□□□□ -0.02
CHMP1A-202ENST00000535997 ACBD7Q8N6N7 88 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms