RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CST6Q15828 149 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 AARDQ4LEZ3 155 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 ZNF542PQ5EBM4 170 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.29□□□□□ -1.88
CD44-235ENST00000532339 FAM46CQ5VWP2 391 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 LYPLAL1Q5VWZ2 237 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 ZNF770Q6IQ21 691 aaPredicted RBP3.29□□□□□ -1.88
CD44-235ENST00000532339 TPGS1Q6ZTW0 290 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 PARGQ86W56 976 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 MEX3DQ86XN8 651 aaKnown RBP3.29□□□□□ -1.88
CD44-235ENST00000532339 CDK20Q8IZL9 346 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 NDUFAF2Q8N183 169 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 SLC22A18ASQ8N1D0 253 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 KLHDC1Q8N7A1 406 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 LPCAT1Q8NF37 534 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 FDCSPQ8NFU4 85 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 OR52N5Q8NH56 324 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 LMX1AQ8TE12 382 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 TRIM51Q9BSJ1 452 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 DCTN5Q9BTE1 182 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 NUDT9Q9BW91 350 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 ZMYND12Q9H0C1 365 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 ING2Q9H160 280 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 ACTL8Q9H568 366 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 RNPEPL1Q9HAU8 725 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 SIX2Q9NPC8 291 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 XPNPEP1Q9NQW7 623 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 SLC39A1Q9NY26 324 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 TRPC4Q9UBN4 977 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 CYTH4Q9UIA0 394 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 NOCTQ9UK39 431 aaKnown RBP3.29□□□□□ -1.88
CD44-235ENST00000532339 APPL1Q9UKG1 709 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 CA5BQ9Y2D0 317 aa3.29□□□□□ -1.88
CD44-235ENST00000532339 CACNA1CQ13936 2221 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 FER1L5A0AVI2 2057 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 A0A0B4J203 849 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 MEIOCA2RUB1 952 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 ANKRD61A6NGH8 418 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 LRRIQ4A6NIV6 560 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 ARGFXA6NJG6 315 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 LMO7DNF2Z398 122 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 SLCO1B7G3V0H7 640 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 VEGFDO43915 354 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 PRKRAO75569 313 aaKnown RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 CTAG2O75638 210 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 STK17BO94768 372 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 MOCS2O96007 188 aaPredicted RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 RAF1P04049 648 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 FAM157CP0CG43 387 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 CALM1P0DP23 149 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 CALM2P0DP24 149 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 CALM3P0DP25 149 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 CYP2F1P24903 491 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 PIK3R1P27986 724 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 MAT2AP31153 395 aaKnown RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 SERPINB6P35237 376 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 MAGEB1P43366 347 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 NPBWR1P48145 328 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 MAZP56270 477 aaKnown RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 SULT2A1Q06520 285 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 TRA2AQ13595 282 aaKnown RBP eCLIP3.28□□□□□ -1.88
CD44-235ENST00000532339 SGCBQ16585 318 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 CLPPQ16740 277 aaPredicted RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 POM121L1PQ3SYA9 428 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 CFAP221Q4G0U5 840 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 FFAR4Q5NUL3 377 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 PRAMEF8Q5VWM4 474 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 IGFL3Q6UXB1 125 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 PAMR1Q6UXH9 720 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 Q6ZS92 163 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 OTUD6AQ7L8S5 288 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 GPR141Q7Z602 305 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 TRIM69Q86WT6 500 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 CATSPER3Q86XQ3 398 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 ZBTB8OSQ8IWT0 167 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 KLHDC8AQ8IYD2 350 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 ZNF440Q8IYI8 595 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 EID3Q8N140 333 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 DNAJC22Q8N4W6 341 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 NOA1Q8NC60 698 aaKnown RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 RNASE8Q8TDE3 154 aaKnown RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 PIWIL1Q96J94 861 aaKnown RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 SENP8Q96LD8 212 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 NDNQ99608 321 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 RHNO1Q9BSD3 238 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 URM1Q9BTM9 101 aaKnown RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 MCRIP2Q9BUT9 160 aaKnown RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 TRIM7Q9C029 511 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 OR2B2Q9GZK3 357 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 SHARPINQ9H0F6 387 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 GLT8D2Q9H1C3 349 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 P2RY12Q9H244 342 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 THAP9Q9H5L6 903 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 FAM207AQ9NSI2 230 aaPredicted RBP3.28□□□□□ -1.88
CD44-235ENST00000532339 DNAJC11Q9NVH1 559 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 GPR83Q9NYM4 423 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 PKD2L2Q9NZM6 624 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 PAK5Q9P286 719 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 SPASTQ9UBP0 616 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 TUBGCP4Q9UGJ1 667 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms