RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 GXYLT2A0PJZ3 443 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 A8MUA0 341 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 TPRP12270 2363 aaKnown RBP19.61■□□□□ 0.73
VPS28-212ENST00000530836 DRD5P21918 477 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 SPIBQ01892 262 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 NHSL2Q5HYW2 709 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 CCNJQ5T5M9 372 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 RNF220Q5VTB9 566 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 TBPL2Q6SJ96 375 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 ZNF517Q6ZMY9 492 aaPredicted RBP19.61■□□□□ 0.73
VPS28-212ENST00000530836 OLIG3Q7RTU3 272 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 ANKRD37Q7Z713 158 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 ZG16BQ96DA0 208 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 SPSB2Q99619 263 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 ARHGDIGQ99819 225 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 RSPO3Q9BXY4 272 aaPredicted RBP19.61■□□□□ 0.73
VPS28-212ENST00000530836 QRSL1Q9H0R6 528 aaKnown RBP19.61■□□□□ 0.73
VPS28-212ENST00000530836 SOX17Q9H6I2 414 aaPredicted RBP19.61■□□□□ 0.73
VPS28-212ENST00000530836 AKIRIN1Q9H9L7 192 aaPredicted RBP19.61■□□□□ 0.73
VPS28-212ENST00000530836 VNN3Q9NY84 501 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 C3orf18Q9UK00 162 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 ORC6Q9Y5N6 252 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 LYVE1Q9Y5Y7 322 aa19.61■□□□□ 0.73
VPS28-212ENST00000530836 NID1P14543 1247 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.6■□□□□ 0.73
VPS28-212ENST00000530836 FLYWCH1Q4VC44 716 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 COLEC12Q5KU26 742 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 TCTN3Q6NUS6 607 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 FIGNL1Q6PIW4 674 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 NPSR1Q6W5P4 371 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 TMEM179BQ7Z7N9 219 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 VRK2Q86Y07 508 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 CRB3Q9BUF7 120 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 ACAD8Q9UKU7 415 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 DTX4Q9Y2E6 619 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 TESMINQ9Y4I5 508 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 PCDHGA10Q9Y5H3 936 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 ACACAQ13085 2346 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 CELSR3Q9NYQ7 3312 aa19.6■□□□□ 0.73
VPS28-212ENST00000530836 SDK2Q58EX2 2172 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 FRG2CA6NGY1 282 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 RRP8O43159 456 aaKnown RBP19.59■□□□□ 0.73
VPS28-212ENST00000530836 GADD45GO95257 159 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 LCN1P31025 176 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 IFNA8P32881 189 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 STAT5AP42229 794 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 RAD23AP54725 363 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 MERTKQ12866 999 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 DECR1Q16698 335 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 HLA-DQA1Q5Y7H0 255 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 SHISA6Q6ZSJ9 500 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 LANCL3Q6ZV70 420 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 SLC29A4Q7RTT9 530 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 IL22RA1Q8N6P7 574 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 C17orf47Q8NEP4 570 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 VANGL1Q8TAA9 524 aaPredicted RBP19.59■□□□□ 0.73
VPS28-212ENST00000530836 PHF10Q8WUB8 498 aaKnown RBP19.59■□□□□ 0.73
VPS28-212ENST00000530836 MR1Q95460 341 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 LCORQ96JN0 433 aaPredicted RBP19.59■□□□□ 0.73
VPS28-212ENST00000530836 CNTNAP3BQ96NU0 1288 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 NR1H4Q96RI1 486 aaPredicted RBP19.59■□□□□ 0.73
VPS28-212ENST00000530836 CNTNAP3Q9BZ76 1288 aa19.59■□□□□ 0.73
VPS28-212ENST00000530836 PDP1Q9P0J1 537 aaPredicted RBP19.59■□□□□ 0.73
VPS28-212ENST00000530836 PPIEQ9UNP9 301 aaKnown RBP19.59■□□□□ 0.73
VPS28-212ENST00000530836 C2orf92A0A1B0GVN3 265 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 H0YAE9 185 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 DLGAP1O14490 977 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 EPPINO95925 133 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 THRBP10828 461 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 CDH12P55289 794 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 EEF1A1P68104 462 aaKnown RBP19.58■□□□□ 0.73
VPS28-212ENST00000530836 TMEM205Q6UW68 189 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 DEF8Q6ZN54 512 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 MARVELD2Q8N4S9 558 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 PIK3C3Q8NEB9 887 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 TFAP2CQ92754 450 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 DHRS1Q96LJ7 313 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 PSD2Q9BQI7 771 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 NUDT9Q9BW91 350 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 POLR2J2Q9GZM3 115 aaKnown RBP19.58■□□□□ 0.73
VPS28-212ENST00000530836 HOXD1Q9GZZ0 328 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 POLR2J3Q9H1A7 115 aaKnown RBP19.58■□□□□ 0.73
VPS28-212ENST00000530836 ACER3Q9NUN7 267 aa19.58■□□□□ 0.73
VPS28-212ENST00000530836 ARRDC5A6NEK1 342 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 SAGE2PA6NJ88 616 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 KLK10O43240 276 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 UGT2B17O75795 530 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 YAP1P46937 504 aaKnown RBP19.58■□□□□ 0.72
VPS28-212ENST00000530836 MICAQ29983 383 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 C6orf52Q5T4I8 152 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 LCN10Q6JVE6 187 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 FAM199XQ6PEV8 388 aaPredicted RBP19.58■□□□□ 0.72
VPS28-212ENST00000530836 DHRSXQ8N5I4 330 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 BCORP1Q8N888 145 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 B3GNT7Q8NFL0 401 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 OR4C15Q8NGM1 316 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 OR6T1Q8NGN1 323 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 GIPC3Q8TF64 312 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 PRRC1Q96M27 445 aa19.58■□□□□ 0.72
VPS28-212ENST00000530836 ADI1Q9BV57 179 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms