RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 P2RX6O15547 441 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 ZW10O43264 779 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 DFNA5O60443 496 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 FMO6PO60774 539 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 CTSVO60911 334 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 SEMA7AO75326 666 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 ENTPD5O75356 428 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 KRT36O76013 467 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 CPSF4O95639 269 aaKnown RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 ATP6V1G2O95670 118 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 SCGB1D1O95968 90 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 C1QCP02747 245 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 CFIP05156 583 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 IL3P08700 152 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 C1QTNF9P0C862 333 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 LAMP1P11279 417 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 COX7A2P14406 83 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 HK1P19367 917 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 TCN1P20061 433 aaPredicted RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 CXCR2P25025 360 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 HOXA6P31267 233 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 BSGP35613 385 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 HPCAL1P37235 193 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 DIO1P49895 249 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 CHN2P52757 468 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 PLA2G16P53816 162 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 PRKAG1P54619 331 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 MTTPP55157 894 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 GFERP55789 205 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 MTPNP58546 118 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 TAS2R50P59544 299 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 DSTNP60981 165 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 HNRNPKP61978 463 aaKnown RBP eCLIP3.9□□□□□ -1.79
CD44-226ENST00000527889 TUBA4AP68366 448 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 RPP38P78345 283 aaKnown RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 ABATP80404 500 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 MS4A2Q01362 244 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 MC1RQ01726 317 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 ZNF33BQ06732 778 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 ZNF763Q0D2J5 394 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 C2orf80Q0P641 193 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 GRIK2Q13002 908 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 SLC14A1Q13336 389 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 RIPK1Q13546 671 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 CAMK2DQ13557 499 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 SELPLGQ14242 412 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 KIR2DS3Q14952 304 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 SHBQ15464 509 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 ZIC1Q15915 447 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 PRICKLE4Q2TBC4 344 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 DEFB110Q30KQ9 67 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 TRMT5Q32P41 509 aaKnown RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 GTDC1Q4AE62 458 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 ZNF385BQ569K4 471 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 PIGGQ5H8A4 983 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 RABL3Q5HYI8 236 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 WASHC2DQ5SRD0 308 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 C6orf10Q5SRN2 563 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 LCE3BQ5TA77 95 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 DEPDC1Q5TB30 811 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 KHDRBS2Q5VWX1 349 aaKnown RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 NKAIN2Q5VXU1 208 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 THOC7Q6I9Y2 204 aaKnown RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 C8orf82Q6P1X6 216 aaPredicted RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 SPESP1Q6UW49 350 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 TMEM108Q6UXF1 575 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 DLEU7Q6UYE1 221 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 HACD2Q6Y1H2 254 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 ZNF793Q6ZN11 406 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 NANOGNBQ7Z5D8 188 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 VN1R4Q7Z5H5 301 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 NET1Q7Z628 596 aaPredicted RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 COMTD1Q86VU5 262 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 IFNEQ86WN2 208 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 OOSP2Q86WS3 158 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 KRTAP1-3Q8IUG1 177 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 RIMKLAQ8IXN7 391 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 SPARTQ8N0X7 666 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 OR4N4Q8N0Y3 316 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 FBXW8Q8N3Y1 598 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 ARL14Q8N4G2 192 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 DPP10Q8N608 796 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 AMER3Q8N944 861 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 MFSD9Q8NBP5 474 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 SUN3Q8TAQ9 357 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 ZCCHC10Q8TBK6 192 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 C16orf78Q8WTQ4 265 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 SLC13A3Q8WWT9 602 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 TMEM125Q96AQ2 219 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 SGK3Q96BR1 496 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 MIEF2Q96C03 454 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 ROPN1LQ96C74 230 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 C11orf24Q96F05 449 aaPredicted RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 AURKBQ96GD4 344 aaPredicted RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 MARS2Q96GW9 593 aaKnown RBP3.9□□□□□ -1.79
CD44-226ENST00000527889 VPS50Q96JG6 964 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 GBP5Q96PP8 586 aa3.9□□□□□ -1.79
CD44-226ENST00000527889 HIST1H2AAQ96QV6 131 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms