RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 NXNL2Q5VZ03 156 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 RBM12BQ8IXT5 1001 aaKnown RBP14.29□□□□□ -0.12
USH1C-207ENST00000527720 SIMC1Q8NDZ2 872 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 OR2T33Q8NG76 320 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 OR4Q3Q8NH05 313 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 TRMT61AQ96FX7 289 aaKnown RBP14.29□□□□□ -0.12
USH1C-207ENST00000527720 KCNS3Q9BQ31 491 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 ADAP2Q9NPF8 381 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 TMEM74BQ9NUR3 256 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 TXNL4BQ9NX01 149 aaKnown RBP14.29□□□□□ -0.12
USH1C-207ENST00000527720 NTNG1Q9Y2I2 539 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 GPR52Q9Y2T5 361 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 SPIN1Q9Y657 262 aaPredicted RBP14.29□□□□□ -0.12
USH1C-207ENST00000527720 SLC35F4A4IF30 521 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 ZNF860A6NHJ4 632 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 CTDSP2O14595 271 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 IGLV3-19P01714 112 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 EIF2S1P05198 315 aaKnown RBP14.29□□□□□ -0.12
USH1C-207ENST00000527720 NT5EP21589 574 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 GPR4P46093 362 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 SLC13A2Q13183 592 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 CLEC12AQ5QGZ9 265 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 SLC30A6Q6NXT4 461 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 SLC22A18ASQ8N1D0 253 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 CA13Q8N1Q1 262 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 CSNK1A1LQ8N752 337 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 COX18Q8N8Q8 333 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 FAM83FQ8NEG4 500 aaPredicted RBP14.29□□□□□ -0.12
USH1C-207ENST00000527720 UFD1Q92890 307 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 ARHGAP9Q9BRR9 750 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 MED18Q9BUE0 208 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 JAM3Q9BX67 310 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 BARHL1Q9BZE3 327 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 KLHL25Q9H0H3 589 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 IRAK4Q9NWZ3 460 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 CD207Q9UJ71 328 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 FBXL21Q9UKT6 434 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 EXOGQ9Y2C4 368 aaKnown RBP14.29□□□□□ -0.12
USH1C-207ENST00000527720 CARD8Q9Y2G2 431 aa14.29□□□□□ -0.12
USH1C-207ENST00000527720 RANBP2P49792 3224 aaKnown RBP14.28□□□□□ -0.12
USH1C-207ENST00000527720 LDB3O75112 727 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 IGHV4-34P06331 123 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 PVRP15151 417 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 GTF2E2P29084 291 aaKnown RBP14.28□□□□□ -0.12
USH1C-207ENST00000527720 TNFSF8P32971 234 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 LTBRP36941 435 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 TFF2Q03403 129 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 DSG2Q14126 1118 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 TMEM31Q5JXX7 168 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 OOSP2Q86WS3 158 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 BRIX1Q8TDN6 353 aaKnown RBP14.28□□□□□ -0.12
USH1C-207ENST00000527720 SLC37A2Q8TED4 501 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 PATE1Q8WXA2 126 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 SLC25A46Q96AG3 418 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 CTHRC1Q96CG8 243 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 PRSS27Q9BQR3 290 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 MAT2BQ9NZL9 334 aa14.28□□□□□ -0.12
USH1C-207ENST00000527720 CDHR4A6H8M9 788 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 WWP2O00308 870 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 SLC30A4O14863 429 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 LIMS3P0CW19 117 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 LIMS4P0CW20 117 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 GLULP15104 373 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 HTR1FP30939 366 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 SEPHS1P49903 392 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 RAB38P57729 211 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 SHC2P98077 582 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 ACSM1Q08AH1 577 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 MGAT2Q10469 447 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 CCINQ13939 588 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 FLYWCH1Q4VC44 716 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 CCNJQ5T5M9 372 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 PRSS41Q7RTY9 318 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 ZBTB8BQ8NAP8 495 aaPredicted RBP14.27□□□□□ -0.12
USH1C-207ENST00000527720 ZNF485Q8NCK3 441 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 SMRP1Q8NCR6 262 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 HOXB13Q92826 284 aaPredicted RBP14.27□□□□□ -0.12
USH1C-207ENST00000527720 SNTG1Q9NSN8 517 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 C14orf105Q9NVL8 296 aa14.27□□□□□ -0.12
USH1C-207ENST00000527720 SF3B6Q9Y3B4 125 aaKnown RBP14.27□□□□□ -0.12
USH1C-207ENST00000527720 SPTY2D1-AS1A0A0U1RR47 76 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 OR5K3A6NET4 321 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 CHST10O43529 356 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 PIP5K1CO60331 668 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 NTN1O95631 604 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 GUSBP08236 651 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 FGF9P31371 208 aaPredicted RBP14.27□□□□□ -0.13
USH1C-207ENST00000527720 GABRA5P31644 462 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 SLC1A3P43003 542 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 PSPHP78330 225 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 ID2Q02363 134 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 EIF2B5Q13144 721 aaKnown RBP14.27□□□□□ -0.13
USH1C-207ENST00000527720 MAPK14Q16539 360 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 MRPL2Q5T653 305 aaKnown RBP14.27□□□□□ -0.13
USH1C-207ENST00000527720 OR2G6Q5TZ20 316 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 KIAA0895LQ68EN5 471 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 RPL13AP3Q6NVV1 102 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 GALNT12Q8IXK2 581 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 PSD4Q8NDX1 1056 aa14.27□□□□□ -0.13
USH1C-207ENST00000527720 TMEM52Q8NDY8 209 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms