RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ZNF221Q9UK13 617 aa19.8■□□□□ 0.76
VPS28-205ENST00000526204 CBLCQ9ULV8 474 aa19.8■□□□□ 0.76
VPS28-205ENST00000526204 CDH23Q9H251 3354 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 CASKO14936 926 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 CPMP14384 443 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 HOXD12P35452 270 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 ATP6V1E1P36543 226 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 RPS5P46782 204 aaKnown RBP19.79■□□□□ 0.76
VPS28-205ENST00000526204 PPP2CBP62714 309 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 PPP2CAP67775 309 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 RUNX2Q13950 521 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 ABHD13Q7L211 337 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 UBE2Q1Q7Z7E8 422 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 OR6F1Q8NGZ6 308 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 FLVCR1-AS1Q8TAF5 88 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 BRIX1Q8TDN6 353 aaKnown RBP19.79■□□□□ 0.76
VPS28-205ENST00000526204 FGF14Q92915 247 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 WDR92Q96MX6 357 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 LMAN2LQ9H0V9 348 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 ASB6Q9NWX5 421 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 C19orf53Q9UNZ5 99 aaPredicted RBP19.79■□□□□ 0.76
VPS28-205ENST00000526204 SLC22A7Q9Y694 548 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 TRAPPC13A5PLN9 417 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 POLR1CO15160 346 aaPredicted RBP19.79■□□□□ 0.76
VPS28-205ENST00000526204 GALP22466 123 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 SIM1P81133 766 aaPredicted RBP19.79■□□□□ 0.76
VPS28-205ENST00000526204 DGLUCYQ7Z3D6 616 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 GID4Q8IVV7 300 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 RNF113BQ8IZP6 322 aaKnown RBP19.79■□□□□ 0.76
VPS28-205ENST00000526204 CAMKK1Q8N5S9 505 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 SYT14Q8NB59 555 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 CAMKVQ8NCB2 501 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 ZNF350Q9GZX5 532 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 TWSG1Q9GZX9 223 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 SYNDIG1Q9H7V2 258 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 NEK6Q9HC98 313 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 TNFRSF10DQ9UBN6 386 aa19.79■□□□□ 0.76
VPS28-205ENST00000526204 PIP5K1CO60331 668 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 CSF3P09919 207 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 GCGRP47871 477 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 ZNF136P52737 540 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 CLDN2P57739 230 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 ZNF155Q12901 538 aaPredicted RBP19.78■□□□□ 0.76
VPS28-205ENST00000526204 RD3Q7Z3Z2 195 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 ARIH2OSQ8N7S6 290 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 ZCCHC10Q8TBK6 192 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 ZNF486Q96H40 463 aaPredicted RBP19.78■□□□□ 0.76
VPS28-205ENST00000526204 SAMD8Q96LT4 415 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 SECISBP2Q96T21 854 aaKnown RBP19.78■□□□□ 0.76
VPS28-205ENST00000526204 ZNF649Q9BS31 505 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 UBQLN3Q9H347 655 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 LYRM4Q9HD34 91 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 SATB2Q9UPW6 733 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 POLHQ9Y253 713 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 NCKAP1Q9Y2A7 1128 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 CDC42EP2O14613 210 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 STX11O75558 287 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 APBB3O95704 486 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 DBIP07108 87 aaKnown RBP19.78■□□□□ 0.76
VPS28-205ENST00000526204 CD79BP40259 229 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 ACTR1BP42025 376 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 ACTR1AP61163 376 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 BDH1Q02338 343 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 GPR68Q15743 365 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 PYDC2Q56P42 97 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 OR4N5Q8IXE1 308 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 ZNF619Q8N2I2 560 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 ZFP41Q8N8Y5 198 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 CSNK1G3Q9Y6M4 447 aa19.78■□□□□ 0.76
VPS28-205ENST00000526204 UNC119BA6NIH7 251 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 NARSO43776 548 aaKnown RBP19.77■□□□□ 0.76
VPS28-205ENST00000526204 CTSVO60911 334 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 LALBAP00709 142 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 LAMP2P13473 410 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 UGT2B7P16662 529 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 CELP19835 753 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 RPS4Y1P22090 263 aaKnown RBP19.77■□□□□ 0.76
VPS28-205ENST00000526204 CFL1P23528 166 aaKnown RBP19.77■□□□□ 0.76
VPS28-205ENST00000526204 SOX18P35713 384 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 TAB1Q15750 504 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 PRRT3Q5FWE3 981 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 TMEM53Q6P2H8 277 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 FIGLAQ6QHK4 219 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 METAP1DQ6UB28 335 aaPredicted RBP19.77■□□□□ 0.76
VPS28-205ENST00000526204 CXXC5Q7LFL8 322 aaKnown RBP19.77■□□□□ 0.76
VPS28-205ENST00000526204 CPOQ8IVL8 374 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 GALNT12Q8IXK2 581 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 FN3KQ9H479 309 aa19.77■□□□□ 0.76
VPS28-205ENST00000526204 MDC1Q14676 2089 aaKnown RBP19.76■□□□□ 0.75
VPS28-205ENST00000526204 A0A087WV62 115 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 A0A1W2PQF6 199 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 CCDC182A6NF36 153 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 P2RX6O15547 441 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 LRRTM2O43300 516 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 TRAPPC2P0DI81 140 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 TRAPPC2BP0DI82 140 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 HOXB2P14652 356 aa19.76■□□□□ 0.75
VPS28-205ENST00000526204 PTBP1P26599 531 aaKnown RBP eCLIP19.76■□□□□ 0.75
VPS28-205ENST00000526204 SNRPNP63162 240 aaKnown RBP19.76■□□□□ 0.75
VPS28-205ENST00000526204 SLC35F1Q5T1Q4 408 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms