RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	ACOT7	O00154	380 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	ADAM10	O14672	748 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	SNPH	O15079	494 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	OXSR1	O95747	527 aa	Predicted RBP	18.98	■□□□□ 0.63
CD44-222	ENST00000526025	ENDOU	P21128	410 aa	Known RBP	18.98	■□□□□ 0.63
CD44-222	ENST00000526025	ATP12A	P54707	1039 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	HPCA	P84074	193 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	KRT72	Q14CN4	511 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	FLYWCH1	Q4VC44	716 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	BICRAL	Q6AI39	1079 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	TIGD3	Q6B0B8	471 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	ARPIN	Q7Z6K5	226 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	SLC22A16	Q86VW1	577 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	MISP	Q8IVT2	679 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	CISD2	Q8N5K1	135 aa	Known RBP	18.98	■□□□□ 0.63
CD44-222	ENST00000526025	OR4C3	Q8NH37	302 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	CPT1C	Q8TCG5	803 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	FAR1	Q8WVX9	515 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	NR4A3	Q92570	626 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	DTNBP1	Q96EV8	351 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	SPATA9	Q9BWV2	254 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	TTTY12	Q9BZ98	90 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	TMEM38A	Q9H6F2	299 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	QPCTL	Q9NXS2	382 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	NTNG1	Q9Y2I2	539 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	AP3M1	Q9Y2T2	418 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	WDR45	Q9Y484	360 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	SVIL	O95425	2214 aa		18.98	■□□□□ 0.63
CD44-222	ENST00000526025	IGLV3-32	A0A0A0MS00	114 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	LRRC3C	A6NJW4	275 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025		G3V3Y1	287 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	SCD	O00767	359 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	TFPT	P0C1Z6	253 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	ZNF24	P17028	368 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	DCT	P40126	519 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	PMP22	Q01453	160 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	C19orf57	Q0VDD7	668 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	ZNF141	Q15928	474 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	GCNT6	Q5T4J0	391 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	FNDC7	Q5VTL7	733 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	TYW3	Q6IPR3	259 aa	Known RBP	18.97	■□□□□ 0.63
CD44-222	ENST00000526025	NANOGP8	Q6NSW7	305 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	FRRS1	Q6ZNA5	592 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	SIAH3	Q8IW03	269 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	FITM2	Q8N6M3	262 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	SLX1A	Q9BQ83	275 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	TBL1XR1	Q9BZK7	514 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	KAT8	Q9H7Z6	458 aa	Known RBP	18.97	■□□□□ 0.63
CD44-222	ENST00000526025	NANOG	Q9H9S0	305 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	FLRT3	Q9NZU0	649 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	B4GALT7	Q9UBV7	327 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	RALY	Q9UKM9	306 aa	Known RBP	18.97	■□□□□ 0.63
CD44-222	ENST00000526025	NCKAP5	O14513	1909 aa		18.97	■□□□□ 0.63
CD44-222	ENST00000526025	RP1L1	Q8IWN7	2480 aa	Predicted RBP	18.96	■□□□□ 0.63
CD44-222	ENST00000526025	FCMR	O60667	390 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	ZIC2	O95409	532 aa	Predicted RBP	18.96	■□□□□ 0.63
CD44-222	ENST00000526025	H6PD	O95479	791 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	FREM3	P0C091	2139 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	ARAF	P10398	606 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	NR2F1	P10589	423 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	HPGD	P15428	266 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	MASP1	P48740	699 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	CRISP3	P54108	245 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	ALDH6A1	Q02252	535 aa	Known RBP	18.96	■□□□□ 0.63
CD44-222	ENST00000526025	MAPK11	Q15759	364 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	SYPL1	Q16563	259 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	GPAT3	Q53EU6	434 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	KLHL26	Q53HC5	615 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	NET1	Q7Z628	596 aa	Predicted RBP	18.96	■□□□□ 0.63
CD44-222	ENST00000526025	GALNT10	Q86SR1	603 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	SERPINA11	Q86U17	422 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	ZNF619	Q8N2I2	560 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	ANKFN1	Q8N957	763 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	SLC38A5	Q8WUX1	472 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	HOPX	Q9BPY8	73 aa	Predicted RBP	18.96	■□□□□ 0.63
CD44-222	ENST00000526025	GPATCH1	Q9BRR8	931 aa	Known RBP	18.96	■□□□□ 0.63
CD44-222	ENST00000526025	THUMPD3	Q9BV44	507 aa	Known RBP	18.96	■□□□□ 0.63
CD44-222	ENST00000526025	SLC38A1	Q9H2H9	487 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	ZNF703	Q9H7S9	590 aa	Predicted RBP	18.96	■□□□□ 0.63
CD44-222	ENST00000526025	ZDHHC11	Q9H8X9	412 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	GALNT9	Q9HCQ5	603 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	BCL2L10	Q9HD36	194 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	OLAH	Q9NV23	265 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	ASF1B	Q9NVP2	202 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	SUCO	Q9UBS9	1254 aa	Known RBP	18.96	■□□□□ 0.63
CD44-222	ENST00000526025	TAGLN3	Q9UI15	199 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	DSPP	Q9NZW4	1301 aa		18.96	■□□□□ 0.63
CD44-222	ENST00000526025	ZNF462	Q96JM2	2506 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	DNAJC13	O75165	2243 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	CHRM4	P08173	479 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	MTPN	P58546	118 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	PLGLB1	Q02325	96 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	RBBP4	Q09028	425 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	C17orf67	Q0P5P2	114 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	CAPRIN1	Q14444	709 aa	Known RBP	18.95	■□□□□ 0.62
CD44-222	ENST00000526025	ZNF630	Q2M218	657 aa	Predicted RBP	18.95	■□□□□ 0.62
CD44-222	ENST00000526025	PRR30	Q53SZ7	412 aa	Predicted RBP	18.95	■□□□□ 0.62
CD44-222	ENST00000526025	COLEC12	Q5KU26	742 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	RNFT1	Q5M7Z0	435 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	C8orf82	Q6P1X6	216 aa	Predicted RBP	18.95	■□□□□ 0.62

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