RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 MBD3L4A6NDZ8 208 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 MBD3L3A6NE82 208 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 MBD3L5A6NJ08 208 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 A6NJY4 79 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 TMEM114B3SHH9 223 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 FAM47E-STBD1D6RA91 191 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 SCAMP2O15127 329 aaKnown RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 TM9SF1O15321 606 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 KCNK2O95069 426 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 UTS2O95399 124 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 IL2RAP01589 272 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ACP2P11117 423 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 G6PDP11413 515 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 CHMP24386 653 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 DPP4P27487 766 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 SSTR2P30874 369 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 S100A5P33763 92 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 EVI2BP34910 448 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 GPC1P35052 558 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 SLC1A6P48664 564 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 LHX2P50458 406 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 AGFG1P52594 562 aaKnown RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ZNF136P52737 540 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 DIO3P55073 304 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 DSCR4P56555 118 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 CLDN15P56746 228 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 CLDN8P56748 225 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 SRYQ05066 204 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ZNF155Q12901 538 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 SF3B4Q15427 424 aaKnown RBP eCLIP8.47□□□□□ -1.052e-7■■■■■ 49
HDAC3-215ENST00000519474 ZNHIT3Q15649 155 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 BCL2A1Q16548 175 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 GRAMD1BQ3KR37 738 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ATP6AP1LQ52LC2 224 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ZCCHC12Q6PEW1 402 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 PLXDC2Q6UX71 529 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ZAR1Q86SH2 424 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 LACC1Q8IV20 430 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 KRTCAP2Q8N6L1 136 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ZNF781Q8N8C0 355 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 RELL2Q8NC24 303 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 OR14L1PQ8NHC6 308 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 MBD3L2Q8NHZ7 208 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 PSMA8Q8TAA3 256 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 SUN5Q8TC36 379 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 GPR151Q8TDV0 419 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 OR5P2Q8WZ92 322 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 SLC9A6Q92581 669 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 TUBGCP3Q96CW5 907 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 DTNBP1Q96EV8 351 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 PGM2Q96G03 612 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 LURAP1Q96LR2 239 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 SORT1Q99523 831 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 TUBA1CQ9BQE3 449 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 YIPF4Q9BSR8 244 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 C1orf50Q9BV19 199 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 AKTIPQ9H8T0 292 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 EQTNQ9NQ60 294 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 SDHAF3Q9NRP4 125 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ZNF629Q9UEG4 869 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 MRTO4Q9UKD2 239 aaKnown RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 RRP15Q9Y3B9 282 aaKnown RBP8.47□□□□□ -1.05
HDAC3-215ENST00000519474 RAP2CQ9Y3L5 183 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ZNF337Q9Y3M9 751 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ACTL7BQ9Y614 415 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 KCNE3Q9Y6H6 103 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 ARHGAP21Q5T5U3 1957 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 KIAA1549Q9HCM3 1950 aa8.47□□□□□ -1.05
HDAC3-215ENST00000519474 H0Y3Z8 333 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 SCO2O43819 266 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 SKAP2O75563 359 aaPredicted RBP8.46□□□□□ -1.06
HDAC3-215ENST00000519474 RCBTB2O95199 551 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 KCNH1O95259 989 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 HSPA4LO95757 839 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 PRPS1L1P21108 318 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 TBXA2RP21731 343 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 BGNP21810 368 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 CTSSP25774 331 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 MAPK1P28482 360 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 RFX3P48380 749 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 CCT3P49368 545 aaKnown RBP8.46□□□□□ -1.06
HDAC3-215ENST00000519474 RPL14P50914 215 aaKnown RBP8.46□□□□□ -1.06
HDAC3-215ENST00000519474 SUCLG1P53597 346 aaKnown RBP8.46□□□□□ -1.06
HDAC3-215ENST00000519474 CLDN18P56856 261 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 WDR4P57081 412 aaKnown RBP8.46□□□□□ -1.06
HDAC3-215ENST00000519474 PHC1P78364 1004 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 PRR5P85299 388 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 TLE4Q04727 773 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 C17orf67Q0P5P2 114 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 FOXF2Q12947 444 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 STX3Q13277 289 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 SNTB1Q13884 538 aaKnown RBP8.46□□□□□ -1.06
HDAC3-215ENST00000519474 PTGR1Q14914 329 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 RCN1Q15293 331 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 DUSP5Q16690 384 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 SMU1Q2TAY7 513 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 SLC25A35Q3KQZ1 300 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 CPTPQ5TA50 214 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 MFSD12Q6NUT3 480 aa8.46□□□□□ -1.06
HDAC3-215ENST00000519474 FIGNL1Q6PIW4 674 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms