RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ZSWIM7Q19AV6 140 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 TRMT12Q53H54 448 aaKnown RBP13.83□□□□□ -0.19
NUP54-217ENST00000514987 ARMC4Q5T2S8 1044 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 HSDL2Q6YN16 418 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 DGLUCYQ7Z3D6 616 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 GID4Q8IVV7 300 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 OR4N5Q8IXE1 308 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 CDK20Q8IZL9 346 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 CADM3Q8N126 398 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 PSD4Q8NDX1 1056 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 SLC25A46Q96AG3 418 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 TMCO6Q96DC7 493 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 KCTD7Q96MP8 289 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 CCDC3Q9BQI4 270 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 FN3KQ9H479 309 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 ADAP2Q9NPF8 381 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 TXNL4BQ9NX01 149 aaKnown RBP13.83□□□□□ -0.19
NUP54-217ENST00000514987 QPCTLQ9NXS2 382 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 FANCMQ8IYD8 2048 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 BLACEA4D250 179 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 UNC119BA6NIH7 251 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 EIF2S1P05198 315 aaKnown RBP13.83□□□□□ -0.2
NUP54-217ENST00000514987 IMPDH2P12268 514 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 FGF9P31371 208 aaPredicted RBP13.83□□□□□ -0.2
NUP54-217ENST00000514987 MAP3K8P41279 467 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 SLC9A3P48764 834 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 RAB38P57729 211 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 POU6F2P78424 691 aaPredicted RBP13.83□□□□□ -0.2
NUP54-217ENST00000514987 MLLT1Q03111 559 aaPredicted RBP13.83□□□□□ -0.2
NUP54-217ENST00000514987 MAP4K2Q12851 820 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 PRICKLE4Q2TBC4 344 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 KIAA0895LQ68EN5 471 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 PAQR6Q6TCH4 344 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 TMPRSS11AQ6ZMR5 421 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 CA13Q8N1Q1 262 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 OR13H1Q8NG92 308 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 OR52L1Q8NGH7 329 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 OR4Q3Q8NH05 313 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 OR52N1Q8NH53 320 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 AP3S1Q92572 193 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 MSLNLQ96KJ4 702 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 HS6ST2Q96MM7 605 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 ZNF559Q9BR84 538 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 ARHGAP9Q9BRR9 750 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 SNTG1Q9NSN8 517 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 CLDND1Q9NY35 253 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 CMAHPQ9Y471 501 aa13.83□□□□□ -0.2
NUP54-217ENST00000514987 LAMA2P24043 3122 aaKnown RBP13.82□□□□□ -0.2
NUP54-217ENST00000514987 CDHR4A6H8M9 788 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 CTDSP2O14595 271 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 NARSO43776 548 aaKnown RBP13.82□□□□□ -0.2
NUP54-217ENST00000514987 AKAP8O43823 692 aaKnown RBP13.82□□□□□ -0.2
NUP54-217ENST00000514987 FGF17O60258 216 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 DLGAP3O95886 979 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 THY1P04216 161 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 SLC35E2P0CK97 266 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 SLC1A3P43003 542 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 GPR4P46093 362 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 BLKP51451 505 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 PSPHP78330 225 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 CLEC12AQ5QGZ9 265 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 ZNF613Q6PF04 617 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 QSOX2Q6ZRP7 698 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 SLC43A2Q8N370 569 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 KLHL36Q8N4N3 616 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 AVL9Q8NBF6 648 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 FAM83FQ8NEG4 500 aaPredicted RBP13.82□□□□□ -0.2
NUP54-217ENST00000514987 GPR151Q8TDV0 419 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 TMEM255BQ8WV15 326 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 HOXB13Q92826 284 aaPredicted RBP13.82□□□□□ -0.2
NUP54-217ENST00000514987 FAM210AQ96ND0 272 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 BARHL1Q9BZE3 327 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 SEMA6CQ9H3T2 930 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 SYNDIG1Q9H7V2 258 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 CD93Q9NPY3 652 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 POLE4Q9NR33 117 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 MAT2BQ9NZL9 334 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 CD207Q9UJ71 328 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 ZNF223Q9UK11 482 aaPredicted RBP13.82□□□□□ -0.2
NUP54-217ENST00000514987 GPR52Q9Y2T5 361 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 TRANK1O15050 2925 aa13.82□□□□□ -0.2
NUP54-217ENST00000514987 SCN3AQ9NY46 2000 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 OR5K3A6NET4 321 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 RGS5O15539 181 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 AQP9O43315 295 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 CDRT1O95170 752 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 RCBTB2O95199 551 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 IGHA1P01876 353 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 LIMS3P0CW19 117 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 LIMS4P0CW20 117 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 CTSEP14091 401 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 BMP7P18075 431 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 GALP22466 123 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 GTF2E2P29084 291 aaKnown RBP13.81□□□□□ -0.2
NUP54-217ENST00000514987 SOX18P35713 384 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 SEPHS1P49903 392 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 SHC2P98077 582 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 HOXC5Q00444 222 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 SLC13A2Q13183 592 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 MRPL2Q5T653 305 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms