RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 ACP2P11117 423 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 CTNNB1P35222 781 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 C19orf48Q6RUI8 117 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 C3P1Q6ZMU1 363 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 C6orf120Q7Z4R8 191 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 CAMKMTQ7Z624 323 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 GRASPQ7Z6J2 395 aaPredicted RBP9.05□□□□□ -0.96
VCAN-210ENST00000513960 CPA6Q8N4T0 437 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 KLK6Q92876 244 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 UBE2E3Q969T4 207 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 DTD2Q96FN9 168 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 SFXN2Q96NB2 322 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 ARL6Q9H0F7 186 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 ZCCHC3Q9NUD5 404 aaKnown RBP9.05□□□□□ -0.96
VCAN-210ENST00000513960 COPS3Q9UNS2 423 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 AP1M2Q9Y6Q5 423 aa9.05□□□□□ -0.96
VCAN-210ENST00000513960 H3BSH0 61 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 RB1P06400 928 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 ACADMP11310 421 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 ADH5P11766 374 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 NPPBP16860 134 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 TPMTP51580 245 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 DGCR2P98153 550 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 FNDC3BQ53EP0 1204 aaKnown RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 TCTE1Q5JU00 501 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 KIAA1324Q6UXG2 1013 aaKnown RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 ZER1Q7Z7L7 766 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 SERPINA12Q8IW75 414 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 WFIKKN2Q8TEU8 576 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 SLC5A11Q8WWX8 675 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 NUS1Q96E22 293 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 SENP5Q96HI0 755 aaPredicted RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 IL17FQ96PD4 163 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 MED20Q9H944 212 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 EMC7Q9NPA0 242 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 CXXC1Q9P0U4 656 aaPredicted RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 MRPS23Q9Y3D9 190 aaKnown RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 INSL6Q9Y581 213 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 HCFC2Q9Y5Z7 792 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 NPC1O15118 1278 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 SOD1P00441 154 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 SNRPBP14678 240 aaKnown RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 SLC6A11P48066 632 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 PSMA6P60900 246 aaKnown RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 TAP2Q03519 686 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 MFSD13AQ14CX5 517 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 HSD17B12Q53GQ0 312 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 CLVS2Q5SYC1 327 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 GPALPP1Q8IXQ4 340 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 SMAP2Q8WU79 429 aaPredicted RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 ZFPM2Q8WW38 1151 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 CXorf58Q96LI9 332 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 BBS4Q96RK4 519 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 FAM83CQ9BQN1 747 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 WFDC6Q9BQY6 131 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 ABCG4Q9H172 646 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 EPHX3Q9H6B9 360 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 CAPN10Q9HC96 672 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 MARK1Q9P0L2 795 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 REV1Q9UBZ9 1251 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 ATPIF1Q9UII2 106 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 ASF1AQ9Y294 204 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 HRH3Q9Y5N1 445 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 SHISA3A0PJX4 238 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 IRGMA1A4Y4 181 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 TMEM229AB2RXF0 380 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 TOR1AO14656 332 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 POP7O75817 140 aaKnown RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 MPC2O95563 127 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 MNX1P50219 401 aaPredicted RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 MVDP53602 400 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 PCDH1Q08174 1060 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 AKIRIN2Q53H80 203 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 KIAA0907Q7Z7F0 614 aaPredicted RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 KLHDC8AQ8IYD2 350 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 BBS1Q8NFJ9 593 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 LHFPL5Q8TAF8 219 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 OR8D1Q8WZ84 308 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 RFKQ969G6 155 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 ZNF514Q96K75 400 aaPredicted RBP9.04□□□□□ -0.96
VCAN-210ENST00000513960 SEC22CQ9BRL7 303 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 BTBD1Q9H0C5 482 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 CD93Q9NPY3 652 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 IFT46Q9NQC8 304 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 DMRT3Q9NQL9 472 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 MLXQ9UH92 298 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 NUBP2Q9Y5Y2 271 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 DENND4CQ5VZ89 1909 aa9.04□□□□□ -0.96
VCAN-210ENST00000513960 FOXE1O00358 373 aaPredicted RBP9.03□□□□□ -0.96
VCAN-210ENST00000513960 SOCS6O14544 535 aa9.03□□□□□ -0.96
VCAN-210ENST00000513960 GPR171O14626 319 aa9.03□□□□□ -0.96
VCAN-210ENST00000513960 ARPC1BO15143 372 aaKnown RBP9.03□□□□□ -0.96
VCAN-210ENST00000513960 PI15O43692 258 aa9.03□□□□□ -0.96
VCAN-210ENST00000513960 SPDEFO95238 335 aa9.03□□□□□ -0.96
VCAN-210ENST00000513960 SLC2A10O95528 541 aa9.03□□□□□ -0.96
VCAN-210ENST00000513960 LGI1O95970 557 aa9.03□□□□□ -0.96
VCAN-210ENST00000513960 ADH1CP00326 375 aa9.03□□□□□ -0.96
VCAN-210ENST00000513960 RAB40BQ12829 278 aa9.03□□□□□ -0.96
VCAN-210ENST00000513960 LASP1Q14847 261 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms