RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 FAM173AQ9BQD7 235 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 GPATCH1Q9BRR8 931 aaKnown RBP13.72□□□□□ -0.21
NUP54-213ENST00000513352 SPAG4Q9NPE6 437 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 POLE3Q9NRF9 147 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 UBQLN4Q9NRR5 601 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 CMTM6Q9NX76 183 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 ANGPT4Q9Y264 503 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 AP3M1Q9Y2T2 418 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 ATRXP46100 2492 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 NBEAQ8NFP9 2946 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 KIAA0513O60268 411 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 T-ENOLP0DO92 83 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 BMP2P12643 396 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 RFC3P40938 356 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 TBCELQ5QJ74 424 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 TYW3Q6IPR3 259 aaKnown RBP13.71□□□□□ -0.21
NUP54-213ENST00000513352 FRRS1Q6ZNA5 592 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 RINLQ6ZS11 566 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.71□□□□□ -0.21
NUP54-213ENST00000513352 SERPINA11Q86U17 422 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 MARCH3Q86UD3 253 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 SULF2Q8IWU5 870 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 SLC15A3Q8IY34 581 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 ZZZ3Q8IYH5 903 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 DEFB107AQ8IZN7 70 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 PGAM4Q8N0Y7 254 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 RBM15BQ8NDT2 890 aaKnown RBP13.71□□□□□ -0.21
NUP54-213ENST00000513352 OR2M7Q8NG81 312 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 OR4C3Q8NH37 302 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 BBS10Q8TAM1 723 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 ZNF597Q96LX8 424 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 SPATA9Q9BWV2 254 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 HOXD1Q9GZZ0 328 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 SLC38A1Q9H2H9 487 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 TMEM38AQ9H6F2 299 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 RUBCNLQ9H714 662 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 SH2D2AQ9NP31 389 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 DEPPQ9NTK1 212 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 ABCG2Q9UNQ0 655 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 PCDHGA10Q9Y5H3 936 aa13.71□□□□□ -0.21
NUP54-213ENST00000513352 FAM220BPB1ANY3 271 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 NME4O00746 187 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 GNB5O14775 395 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 GSTA4O15217 222 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 GMFGO60234 142 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 FADS1O60427 444 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 RASAL1O95294 804 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 ZIC2O95409 532 aaPredicted RBP13.7□□□□□ -0.22
NUP54-213ENST00000513352 TFPTP0C1Z6 253 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 TBXA2RP21731 343 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 AQP1P29972 269 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 ATP12AP54707 1039 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 PMP22Q01453 160 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 LIPEQ05469 1076 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 RBBP4Q09028 425 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 PDZK1Q5T2W1 519 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 REEP3Q6NUK4 255 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 SLC30A6Q6NXT4 461 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 C8orf82Q6P1X6 216 aaPredicted RBP13.7□□□□□ -0.22
NUP54-213ENST00000513352 BNC2Q6ZN30 1099 aaPredicted RBP13.7□□□□□ -0.22
NUP54-213ENST00000513352 NET1Q7Z628 596 aaPredicted RBP13.7□□□□□ -0.22
NUP54-213ENST00000513352 PACS2Q86VP3 889 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 KRT73Q86Y46 540 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 PTOV1Q86YD1 416 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 PEX5LQ8IYB4 626 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 POGLUT1Q8NBL1 392 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 HIPK4Q8NE63 616 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 OR2T12Q8NG77 320 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 SLC39A7Q92504 469 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 KCTD14Q9BQ13 255 aaPredicted RBP13.7□□□□□ -0.22
NUP54-213ENST00000513352 TREX2Q9BQ50 279 aaPredicted RBP13.7□□□□□ -0.22
NUP54-213ENST00000513352 ANGPTL4Q9BY76 406 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 QRSL1Q9H0R6 528 aaKnown RBP13.7□□□□□ -0.22
NUP54-213ENST00000513352 PPP4R1LQ9P1A2 415 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 BOKQ9UMX3 212 aaPredicted RBP13.7□□□□□ -0.22
NUP54-213ENST00000513352 USP22Q9UPT9 525 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 PCDHGB6Q9Y5F9 930 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 WIF1Q9Y5W5 379 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.7□□□□□ -0.22
NUP54-213ENST00000513352 TLN1Q9Y490 2541 aaKnown RBP13.7□□□□□ -0.22
NUP54-213ENST00000513352 SPTA1P02549 2419 aa13.7□□□□□ -0.22
NUP54-213ENST00000513352 A0A0G2JPF8 293 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 CENPVL1A0A0U1RR11 272 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 PINLYPA6NC86 204 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 HNRNPCL2B2RXH8 293 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 HNRNPCL3B7ZW38 293 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 H3BNH8 94 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 GTPBP1O00178 669 aaKnown RBP13.69□□□□□ -0.22
NUP54-213ENST00000513352 NDUFB5O43674 189 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 HNRNPCL1O60812 293 aaKnown RBP13.69□□□□□ -0.22
NUP54-213ENST00000513352 SNX4O95219 450 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 ANGPTL1O95841 491 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 HNRNPCL4P0DMR1 293 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 PCGF2P35227 344 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 EEFSECP57772 596 aaKnown RBP13.69□□□□□ -0.22
NUP54-213ENST00000513352 SNTA1Q13424 505 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 MAPK11Q15759 364 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 ADRM1Q16186 407 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 VMACQ2NL98 169 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 OR5M10Q6IEU7 315 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms