RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 NAGSQ8N159 534 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 EDAQ92838 391 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 INPP5KQ9BT40 448 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 SOX17Q9H6I2 414 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-215ENST00000496447 BEX1Q9HBH7 125 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 CD8B2A6NJW9 211 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 SCGB2A1O75556 95 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 JRKO75564 520 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 RGS9O75916 674 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-215ENST00000496447 DIRAS3O95661 229 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 PPP1R3DO95685 299 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 ADAP00813 363 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 CD8BP10966 210 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 LHCGRP22888 699 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 RBPJQ06330 500 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 SIMC1Q8NDZ2 872 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 FAM46BQ96A09 425 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 ULBP3Q9BZM4 244 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 SMOXQ9NWM0 555 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 MAS1P04201 325 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 CSNK1EP49674 416 aaKnown RBP12.4□□□□□ -0.42
PTPRF-215ENST00000496447 SLC26A5P58743 744 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 MYLIPQ8WY64 445 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 PRSS21Q9Y6M0 314 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 MYH1P12882 1939 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 SETD1AO15047 1707 aaKnown RBP12.4□□□□□ -0.42
PTPRF-215ENST00000496447 NDUFB2O95178 105 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 CDKN2CP42773 168 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 VASH1Q7L8A9 365 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-215ENST00000496447 AGBL5Q8NDL9 886 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 DCBLD2Q96PD2 775 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 ZIC5Q96T25 663 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 MYH13Q9UKX3 1938 aa12.4□□□□□ -0.42
PTPRF-215ENST00000496447 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 LCATP04180 440 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 PRLHRP49683 370 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 DAP3P51398 398 aaKnown RBP12.39□□□□□ -0.43
PTPRF-215ENST00000496447 PLEKHN1Q494U1 663 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-215ENST00000496447 CDNFQ49AH0 187 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 SHFQ7M4L6 423 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 KLHDC9Q8NEP7 349 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 OR52R1Q8NGF1 315 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 TMIGD2Q96BF3 282 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 TCEAL7Q9BRU2 100 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 ZNF175Q9Y473 711 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 PEX14O75381 377 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 GKN3PP0CG01 181 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 YPEL5P62699 121 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 CSNK2A1P68400 391 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-215ENST00000496447 SLC14A2Q15849 920 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 FAM26DQ5JW98 314 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 PDZD9Q8IXQ8 264 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 FRS2Q8WU20 508 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 FEVQ99581 238 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 TXLNGYQ9BZA5 131 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 IL20RAQ9UHF4 553 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 PCDHA9Q9Y5H5 950 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 LOC102723532A0A0G2JNH3 316 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 SOBPA7XYQ1 873 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 ANKRD28O15084 1053 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 SFTPBP07988 381 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 IFNGR1P15260 489 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 FAM189BP81408 668 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 DCAF12Q5T6F0 453 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 METTL2BQ6P1Q9 378 aaKnown RBP12.39□□□□□ -0.43
PTPRF-215ENST00000496447 C3P1Q6ZMU1 363 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 ZNF765Q7L2R6 523 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 ABHD12BQ7Z5M8 362 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-215ENST00000496447 OR9K2Q8NGE7 335 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 DPH1Q9BZG8 443 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 ACTR6Q9GZN1 396 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 ZBP1Q9H171 429 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 POT1Q9NUX5 634 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 BTNL2Q9UIR0 455 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 A6NIZ1 184 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 H7C417 338 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 RNASET2O00584 256 aaKnown RBP12.39□□□□□ -0.43
PTPRF-215ENST00000496447 T-ENOLP0DO92 83 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 CCR7P32248 378 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 RAP1BP61224 184 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 RAP1AP62834 184 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 NKX3-2P78367 333 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 TAP2Q03519 686 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 NADSYN1Q6IA69 706 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 TMEM173Q86WV6 379 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-215ENST00000496447 RCBTB1Q8NDN9 531 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 TRIM43Q96BQ3 446 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-215ENST00000496447 MRPL38Q96DV4 380 aaKnown RBP12.39□□□□□ -0.43
PTPRF-215ENST00000496447 MAGED1Q9Y5V3 778 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-215ENST00000496447 ENPP4Q9Y6X5 453 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 M0R3H8 397 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 TMEM225BP0DP42 221 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 CRABP1P29762 137 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 OR7A5Q15622 319 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 RPE65Q16518 533 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 CUTCQ9NTM9 273 aa12.39□□□□□ -0.43
PTPRF-215ENST00000496447 TRAV6A0A075B6T7 132 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 BLACEA4D250 179 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 LINC01553A4QN01 128 aa12.38□□□□□ -0.43
PTPRF-215ENST00000496447 CLCA1A8K7I4 914 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms