RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 C1orf123Q9NWV4 160 aa2.45□□□□□ -2.02
VPS50-219ENST00000495039 EHFQ9NZC4 300 aa2.45□□□□□ -2.02
VPS50-219ENST00000495039 APOBEC3BQ9UH17 382 aaKnown RBP2.45□□□□□ -2.02
VPS50-219ENST00000495039 PIN4Q9Y237 131 aaKnown RBP2.45□□□□□ -2.02
VPS50-219ENST00000495039 EIF3LQ9Y262 564 aaKnown RBP2.45□□□□□ -2.02
VPS50-219ENST00000495039 METP08581 1390 aa2.45□□□□□ -2.02
VPS50-219ENST00000495039 FAM230AA0A1W2PPH8 454 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 ANKRD30BLA7E2S9 258 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 PDXKO00764 312 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 TOM1L1O75674 476 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 LYPD3O95274 346 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 JCHAINP01591 159 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 ALOX5P09917 674 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 UQCRBP14927 111 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 CCNA2P20248 432 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 PTBP1P26599 531 aaKnown RBP eCLIP2.44□□□□□ -2.02
VPS50-219ENST00000495039 MAPK3P27361 379 aaPredicted RBP2.44□□□□□ -2.02
VPS50-219ENST00000495039 RPA1P27694 616 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 GMFBP60983 142 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 OSTNP61366 133 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 RPL32P62910 135 aaKnown RBP2.44□□□□□ -2.02
VPS50-219ENST00000495039 PLOD1Q02809 727 aaPredicted RBP2.44□□□□□ -2.02
VPS50-219ENST00000495039 SPP2Q13103 211 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 EXOSC2Q13868 293 aaKnown RBP2.44□□□□□ -2.02
VPS50-219ENST00000495039 TFDP1Q14186 410 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 KCNJ11Q14654 390 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 ISXQ2M1V0 245 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 TEX44Q53QW1 395 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 C9orf129Q5T035 196 aaKnown RBP2.44□□□□□ -2.02
VPS50-219ENST00000495039 DCST2Q5T1A1 773 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 ZNF57Q68EA5 555 aaPredicted RBP2.44□□□□□ -2.02
VPS50-219ENST00000495039 CNSTQ6PJW8 725 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 LRRC70Q7Z2Q7 622 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 ZNF677Q86XU0 584 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 C9orf40Q8IXQ3 194 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 GPR65Q8IYL9 337 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 ANKRD20A12PQ8NF67 263 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 LINC01006Q8NI28 216 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 ADAMTS16Q8TE57 1224 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 MCHR2Q969V1 340 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 ADIPOR1Q96A54 375 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 MAGEB18Q96M61 343 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 KCNK16Q96T55 309 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 TBC1D10AQ9BXI6 508 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 KRT23Q9C075 422 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 C1orf21Q9H246 121 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 LPAR2Q9HBW0 351 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 POLD4Q9HCU8 107 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 NGBQ9NPG2 151 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 ODF2LQ9ULJ1 636 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 MTF2Q9Y483 593 aaPredicted RBP2.44□□□□□ -2.02
VPS50-219ENST00000495039 GMPPBQ9Y5P6 360 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 FLVCR1Q9Y5Y0 555 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 TNRQ92752 1358 aa2.44□□□□□ -2.02
VPS50-219ENST00000495039 RNF222A6NCQ9 220 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 E9PLD3 99 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 PRPSAP2O60256 369 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 TRIM3O75382 744 aaPredicted RBP2.43□□□□□ -2.02
VPS50-219ENST00000495039 SERF1AO75920 110 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 APBB3O95704 486 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 CCDC166P0CW27 439 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 H2AFXP16104 143 aaPredicted RBP2.43□□□□□ -2.02
VPS50-219ENST00000495039 DNAJB1P25685 340 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 AXLP30530 894 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 CEBPEQ15744 281 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 CDKN3Q16667 212 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 DCAF4L1Q3SXM0 396 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 SCYL2Q6P3W7 929 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 STAC2Q6ZMT1 411 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 IFNEQ86WN2 208 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 BPIFB2Q8N4F0 458 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 CERS5Q8N5B7 392 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 BCORP1Q8N888 145 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 CNNM3Q8NE01 707 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 STKLD1Q8NE28 680 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 OR52B4Q8NGK2 314 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 MRPL38Q96DV4 380 aaKnown RBP2.43□□□□□ -2.02
VPS50-219ENST00000495039 VSTM2LQ96N03 204 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 RTBDNQ9BSG5 229 aaPredicted RBP2.43□□□□□ -2.02
VPS50-219ENST00000495039 COMMD4Q9H0A8 199 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 VAT1LQ9HCJ6 419 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 GALPQ9UBC7 116 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 RPS6KB2Q9UBS0 482 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 ATP6V1HQ9UI12 483 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 PDE10AQ9Y233 779 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 CLCA3PQ9Y6N3 262 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 ANKRD30BQ9BXX2 1392 aa2.43□□□□□ -2.02
VPS50-219ENST00000495039 NCAPD2Q15021 1401 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 CCDC7Q96M83 1385 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 EPOPA6NHQ4 379 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 OR7A17O14581 309 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 ANP32DO95626 131 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 PTBP3O95758 552 aaKnown RBP2.42□□□□□ -2.02
VPS50-219ENST00000495039 PGK1P00558 417 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 CA3P07451 260 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 FUT1P19526 365 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 ZP3P21754 424 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 UGT1A3P35503 534 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 GNPDA1P46926 289 aa2.42□□□□□ -2.02
VPS50-219ENST00000495039 DHPSP49366 369 aaPredicted RBP2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms